EMAGE mouse gene expression spatial database

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EMAGE:923

Pax2 paired box gene 2 ( MGI:97486)
TS17 (35 Somite no.)
in situ hybridisation

Data Images


Fig 4B (Pax2, upper) Hadrys et al, 1998 [PMID:9389661] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd who owns the copyright.	Fig 4B (Pax2, lower) Hadrys et al, 1998 [PMID:9389661] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd who owns the copyright.	Fig 4B Hadrys et al, 1998 [PMID:9389661] . Copyright: This image is from Development and is displayed with the permission of the Company of Biologists Ltd who owns the copyright.

Expression pattern clarity:
Find spatially similar wholemount expression patterns:
Find spatially similar expression patterns:

Notes:

The wholemount stained embryo in Image 1 was vibratome sectioned to produce Image 2. The approximate plane of section is indicated in the cartoon in Image 3.

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

3D mapping

3D context movie

wholemount mapping

View mapped 3D expression image

Download individual expression domains:

923_wholemount_strong_3D_2.wlz

923_wholemount_moderate_3D_2.wlz

923_wholemount_weak_3D_1.wlz

923_wholemount_notDetected_3D_2.wlz

923_voxel_strong_3D_1.wlz

923_voxel_moderate_3D_1.wlz

923_voxel_notDetected_3D_1.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:923_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Find spatially similar expression patterns:

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

otocyst

detected

regional

Pax2 is confined to the ventromedial wall of the otocyst in a complementary pattern to Nkx5-1

Annotation Validation:

EMAGE Editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	MGI:1303352
Entity Detected:	Pax2, paired box gene 2 ( MGI:97486)
Notes:	The probe used in this study by Hadrys et al, 1998 [PMID:9389661] is of undefined sequence.
Chemistry:	RNA
Strand:	antisense

Specimen

Organism:	mouse
Age:	35 Somite no.
Theiler Stage:	TS17
Mutations:	none (wild-type)
Preparation:	wholemount plus section of wholemount

Procedures

General Information

Authors:	Hadrys et al, 1998 [PMID:9389661] Indexed by GXD, Spatially mapped by EMAGE
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	non-screen
References:	[ PMID:9389661] Hadrys T, Braun T, Rinkwitz-Brandt S, Arnold HH, Bober E 1998 Nkx5-1 controls semicircular canal formation in the mouse inner ear. Development (125):33-9
Links:	MGI:1303355 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source