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EMAGE:9248

Nfia nuclear factor I/A ( MGI:108056)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9248 EMAGE:9248 EMAGE:9248 EMAGE:9248 EMAGE:9248
"Pseudo-wholemount" of euxassay_018088. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018088_01 euxassay_018088_02 euxassay_018088_03 euxassay_018088_04
EMAGE:9248 EMAGE:9248 EMAGE:9248 EMAGE:9248 EMAGE:9248
euxassay_018088_05 euxassay_018088_06 euxassay_018088_07 euxassay_018088_08 euxassay_018088_09
EMAGE:9248 EMAGE:9248 EMAGE:9248 EMAGE:9248 EMAGE:9248
euxassay_018088_10 euxassay_018088_11 euxassay_018088_12 euxassay_018088_13 euxassay_018088_14
EMAGE:9248 EMAGE:9248 EMAGE:9248 EMAGE:9248 EMAGE:9248
euxassay_018088_15 euxassay_018088_16 euxassay_018088_17 euxassay_018088_18 euxassay_018088_19
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euxassay_018088_20 euxassay_018088_21 euxassay_018088_22 euxassay_018088_23 euxassay_018088_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9248Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9248_wholemount_strong.wlz
9248_wholemount_moderate.wlz
9248_wholemount_weak.wlz
9248_wholemount_possible.wlz
9248_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9248_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50749
Entity Detected:Nfia, nuclear factor I/A ( MGI:108056)
Sequence:sense strand is shown

>T50749
TCCAACCCTGATCAGAAAGGCAAGATGCGGAGAATTGACTGCCTCCGCCAGGCAGATAAAGTATGGAGGT
TGGACCTCGTCATGGTGATCTTGTTCAAAGGTATTCCGCTGGAAAGTACTGATGGCGAGCGCCTTGTAAA
GAGTCCACAGTGCTCTAATCCAGGGCTCTGTGTCCAGCCCCATCACATAGGGGTTTCTGTAAAGGAACTC
GATTTATATTTGGCATACTTTGTACATGCAGCAGATTCAAGTCAATCTGAAAGTCCCAGCCAGCCAAGTG
AAGCTGACATTAAGGACCAGCCAGAAAATGGACATTTGGGCTTCCAGGACAGCTTTGTCACATCAGGTGT
TTTCAGTGTGACTGAGCTAGTAAGAGTGTCACAAACACCAATAGCTGCAGGAACCGGCCCCAATTTTTCT
CTCTCTGATTTGGAAAGTTCTTCATACTACAGCATGAGTCCAGGAGCAATGAGGAGGTCTCTGCCCAGCA
CATCCTCTACCAGCTCTACAAAGCGCCTCAAGTCTGTGGAGGATGAAATGGACAGTCCTGGTGAAGAACC
ATTTTACACAGGCCAAGGGCGCTCCCCAGGGAGTGGCAGCCAGTCCAGTGGATGGCATGAAGTAGAGCCA
GGCTTGCCATCTCCAAGCACACTGAAGAAGTCTGAGAAGTCTGGTTTCAGCAGCCCCTCCCCTTCGCAGA
CCTCCTCCCTGGGAACAGCATTCACACAGCATCACCGACCTGTCATTACAGGACCCAGAGCAAGTCCACA
TGCGACGCCATCGACTCTCCACTTTCCAACGTCACCCATCATCCAGCAGCCTGGGCCTTACTTCTCACAC
CCAGCCATCCGTTACCACCCTCAGGAGACGCTGAAAGAGTTTGTCCAACTTGTCTGTCCTGATGCTGGTC
AG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TCCAACCCTGATCAGAAAGG; Reverse Primer - name:unspecified, sequence:CTGACCAGCATCAGGACAGA. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9247 same embryo
 EMAGE:9249 same embryo
 EurExpress:euxassay_018088 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS