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EMAGE:9253

Foxj2 forkhead box J2 ( MGI:1926805)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9253 EMAGE:9253 EMAGE:9253 EMAGE:9253 EMAGE:9253
"Pseudo-wholemount" of euxassay_017990. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017990_01 euxassay_017990_02 euxassay_017990_03 euxassay_017990_04
EMAGE:9253 EMAGE:9253 EMAGE:9253 EMAGE:9253 EMAGE:9253
euxassay_017990_05 euxassay_017990_06 euxassay_017990_07 euxassay_017990_08 euxassay_017990_09
EMAGE:9253 EMAGE:9253 EMAGE:9253 EMAGE:9253 EMAGE:9253
euxassay_017990_10 euxassay_017990_11 euxassay_017990_12 euxassay_017990_13 euxassay_017990_14
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euxassay_017990_15 euxassay_017990_16 euxassay_017990_17 euxassay_017990_18 euxassay_017990_19
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euxassay_017990_20 euxassay_017990_21 euxassay_017990_22 euxassay_017990_23 euxassay_017990_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9253Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9253_wholemount_strong.wlz
9253_wholemount_moderate.wlz
9253_wholemount_weak.wlz
9253_wholemount_possible.wlz
9253_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9253_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50409
Entity Detected:Foxj2, forkhead box J2 ( MGI:1926805)
Sequence:sense strand is shown

>T50409
ACAAGTGTTTCCGGAAGGTGCCCAGACCTCGGGATGACCCTGGGAAGGGCTCCTATTGGACAATTGACAC
CTGCCCTGACATTTCCCGGAAGAGAAGACACCCTCCAGATGATGACCTATCCCAAGACTCCCCAGAGCAG
GAAGCCAGCAAAAGCCCCCGGGGAGGTGTTCCAGGGAGTGGAGAAGCCTCACTCTCTCACGAGGGGACTC
CTCAGATGTCACTTCAGAGCCCCTCCTCCGTGGCCAACTACAGCCAGGGCCCAGGGTCTGTGGATGGTGG
AGCAGTGGCAGCAGGGGCCCCAGGCCAGGAGAGCACAGAGGGCGCCCCTCCCCTCTACAACACCAACCAT
GACTTCAAATTCTCCTACTCAGAGATCAACTTTCAGGACCTAAGCTGGTCCTTCCGCAACCTCTACAAAT
CCATGCTGGAGCGGTCCTCCTCCTCCCAGCACGGCTTTTCCTCACTCCTGGGAGACATGCCACCTTCTAA
CAACTACTACGTGTACCAGCAGCAGCAACAGCAGCAGCCACCACCACAGCCACAGCCACCACCCCAGCAA
CCACAACCACAGCAGCAGCAGGCACCCACTCAGGGCCCCTCAAATGTAGGGGGTGCCCCTCCACTGCACA
CCCCAAGCCCTGATGGCTGTACTACACCAGGGGGAAAACAAGCGGGCGCTGAAGGCTACGGCCCCCCGAC
TGGGATGGCCATGCATCCTCCCCCACTGCAGCACGGAGGCTACCACCCTCATCAGCACCATCCCCACTCC
CACCCTGCCCAGCAGCCACCACAGCCACAGGCGCAGAGCCAGGCATCCATCAACAGCACTGGCTTTGCCT
TTCCTCCTGACTGGTGCTCCAATATTGACTCCTTAAAGGAAAGCTTCAAAATGGTGAACCGGCTCAACTG
GTCCAGCATCGAGCAGTCCCAGTTCTCAGAGCTCATGGAGAGCCTACGGCAGGCAGAGCAGAGGAACTGG
AC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:ACAAGTGTTTCCGGAAGGTG; Reverse Primer - name:unspecified, sequence:GTCCAGTTCCTCTGCTCTG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9251 same embryo
 EMAGE:9252 same embryo
 EMAGE:9250 same embryo
 EurExpress:euxassay_017990 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS