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EMAGE:9280

Acsl1 acyl-CoA synthetase long-chain family member 1 ( MGI:102797)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9280 EMAGE:9280 EMAGE:9280 EMAGE:9280 EMAGE:9280
"Pseudo-wholemount" of euxassay_018158. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018158_01 euxassay_018158_02 euxassay_018158_03 euxassay_018158_04
EMAGE:9280 EMAGE:9280 EMAGE:9280 EMAGE:9280 EMAGE:9280
euxassay_018158_05 euxassay_018158_06 euxassay_018158_07 euxassay_018158_08 euxassay_018158_09
EMAGE:9280 EMAGE:9280 EMAGE:9280 EMAGE:9280 EMAGE:9280
euxassay_018158_10 euxassay_018158_11 euxassay_018158_12 euxassay_018158_13 euxassay_018158_14
EMAGE:9280 EMAGE:9280 EMAGE:9280 EMAGE:9280 EMAGE:9280
euxassay_018158_15 euxassay_018158_16 euxassay_018158_17 euxassay_018158_18 euxassay_018158_19
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euxassay_018158_20 euxassay_018158_21 euxassay_018158_22 euxassay_018158_23 euxassay_018158_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9280Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9280_wholemount_strong.wlz
9280_wholemount_moderate.wlz
9280_wholemount_weak.wlz
9280_wholemount_possible.wlz
9280_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9280_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50059
Entity Detected:Acsl1, acyl-CoA synthetase long-chain family member 1 ( MGI:102797)
Sequence:sense strand is shown

>T50059
TGATCCAGAAGGGGTTCAAGCCTTGCTCCGAGCAGTTCATCGGCCTCTTCTCTCAAAACAGACCCGAGTG
GGTGATCGTCGAGCAAGGATGCTTCTCTTACTCAATGGTGGTCGTCCCGCTCTATGACACCCTTGGAGCT
GACGCCATCACCTACATAGTGAACAAAGCTGAACTCTCTGTGATTTTTGCTGACAAGCCAGAAAAAGCCA
AACTCTTATTAGAAGGTGTAGAAAACAAGTTAACACCATGCCTTAAAATCATAGTCATCATGGACTCCTA
CGGCAGTGATCTGGTGGAACGAGGCAAGAAGTGTGGGGTGGAAATCATCAGCCTCAAAGCTCTGGAGGAC
CTTGGAAGAGTGAACAGAGTGAAGCCCAAGCCTCCAGAACCCGAAGATCTTGCGATAATTTGTTTCACAA
GTGGAACTACAGGCAACCCCAAAGGAGCAATGATCACTCACCAAAACATTATAAACGACTGCTCAGGTTT
TATAAAAGCAACAGAGAGTGCATTCATCGCTTCCACAGATGATGTGCTGATATCTTTCTTGCCTCTCGCC
CATATGTTTGAGACCGTTGTAGAGTGTGTAATGCTGTGTCATGGAGCTAAGATAGGATTTTTCCAAGGAG
ATATCAGGCTGCTTATGGACGACCTCAAGGTGCTTCAGCCCACCATCTTCCCTGTGGTTCCCAGGCTGCT
GAACCGGATGTTCGACAGAATTTTTGGACAAGCAAACACTTCCTTGAAGCGATGGCTGTTGGACTTTGCC
TCCAAAAGGAAAGAGGCGGAGCTTCGCAGTGGCATCGTCAGAAACAACAGCCTG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TGATCCAGAAGGGGTTCAAG; Reverse Primer - name:unspecified, sequence:CAGGCTGTTGTTTCTGACGA. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9282 same embryo
 EMAGE:9279 same embryo
 EMAGE:9283 same embryo
 EMAGE:9281 same embryo
 EurExpress:euxassay_018158 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS