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EMAGE:9286

Mef2c myocyte enhancer factor 2C ( MGI:99458)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9286 EMAGE:9286 EMAGE:9286 EMAGE:9286 EMAGE:9286
"Pseudo-wholemount" of euxassay_018172. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018172_01 euxassay_018172_02 euxassay_018172_03 euxassay_018172_04
EMAGE:9286 EMAGE:9286 EMAGE:9286 EMAGE:9286 EMAGE:9286
euxassay_018172_05 euxassay_018172_06 euxassay_018172_07 euxassay_018172_08 euxassay_018172_09
EMAGE:9286 EMAGE:9286 EMAGE:9286 EMAGE:9286 EMAGE:9286
euxassay_018172_10 euxassay_018172_11 euxassay_018172_12 euxassay_018172_13 euxassay_018172_14
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euxassay_018172_15 euxassay_018172_16 euxassay_018172_17 euxassay_018172_18 euxassay_018172_19
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euxassay_018172_20 euxassay_018172_21 euxassay_018172_22 euxassay_018172_23 euxassay_018172_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9286Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9286_wholemount_strong.wlz
9286_wholemount_moderate.wlz
9286_wholemount_weak.wlz
9286_wholemount_possible.wlz
9286_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9286_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50698
Entity Detected:Mef2c, myocyte enhancer factor 2C ( MGI:99458)
Sequence:sense strand is shown

>T50698
TTCCGTAGCAACTCCTACTTTACCAGGACAAGGAATGGGAGGATATCCATCAGCCATTTCAACAACATAT
GGTACTGAGTACTCTCTGAGTAGCGCAGATCTGTCATCTCTGTCTGGCTTCAACACTGCCAGTGCGCTCC
ACCTCGGCTCTGTAACTGGCTGGCAGCAGCAGCACCTACATAACATGCCGCCATCTGCCCTCAGTCAGTT
GGGAGACCGTACCACCACCCCTTCGAGATACCCACAACACACCACGCGCCACGAGGCGGGGAGGTCTCCT
GTTGACAGCTTGAGCAGCTGTAGCAGTTCCTACGATGGGAGCGACCGAGAGGATCACCGGAACGAATTCC
ACTCCCCCATTGGACTCACCAGACCTTCGCCGGACGAAAGGGAAAGTCCTTCAGTCAAGCGCATGCGACT
CTCTGAAGGATGGGCAACATGATCACATTATTACTTAATAGTTTTTTTTTTTCTTGCAGTGTGTGTGTGT
GCTATACCTTAATGGGGAAGGGGGGGTCGATATGCATTATATGTGCCGTGTGTGGAAAAAAAAAAAAAAA
AGTCAGGTACTCTGTTTTGTAAAAGTACTTTTAAATTGCCTCAGTGATACAGTATAAAGATAAACAGAAA
TGCTGAGATACGCTTAGCACTTGAGTTGTACAACAGAACACTTGTACAAAATAGATTTTAAGGCTAACTT
CTTTTCACTGTTGTGACCCTTTGCAAAATGTATGTTACAATAGATAGTGTCATGTTGCAGGTTCAACGTT
ATTTACATGTAAATAGACAAAAGGAAACATTTGCCAAAAGCGGCAGATCTTTACTGAAAGAGAGAGCAGC
TGTTATGCAACATATAGAAAAATGTATAGAGGTTTGGACAGACCCGGCAAGTGGTGACTACCGGTAATTG
TAGGAACACGCCTGT
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TTCCGTAGCAACTCCTACTTTACC; Reverse Primer - name:unspecified, sequence:ACAGGCGTGTTCCTACAATTAC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9285 same embryo
 EMAGE:9284 same embryo
 EurExpress:euxassay_018172 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS