EMAGE mouse gene expression spatial database

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EMAGE:9380

Igtp interferon gamma induced GTPase ( MGI:107729)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_018336. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_018336_01	euxassay_018336_02	euxassay_018336_03	euxassay_018336_04

euxassay_018336_05	euxassay_018336_06	euxassay_018336_07	euxassay_018336_08	euxassay_018336_09

euxassay_018336_10	euxassay_018336_11	euxassay_018336_12	euxassay_018336_13	euxassay_018336_14

euxassay_018336_15	euxassay_018336_16	euxassay_018336_17	euxassay_018336_18	euxassay_018336_19

euxassay_018336_20	euxassay_018336_21	euxassay_018336_22	euxassay_018336_23	euxassay_018336_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

9380_wholemount_strong.wlz

9380_wholemount_moderate.wlz

9380_wholemount_weak.wlz

9380_wholemount_possible.wlz

9380_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:9380_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T50559
Entity Detected:	Igtp, interferon gamma induced GTPase ( MGI:107729)
Sequence:	sense strand is shown >T50559 CAACATAGATAGAGCAGGGTCTGAGAGGAAACCTAGGAGCTCAGGCTGCCCTTCAGCTGCTCCTGCCTCT TCTAATTGCTCTTCCCCACAGGACCCTGCCCCACCACACTTCTCTCTCTCCTGACCGTCCTGAGCCTGGA TTGCAGCTTTGTAAGGCTTCTGAGCAGGTTCTGAAGGAGAGTAAAGAGTGCAAGGCCTAGAGCAGACCCA CAGAGTTCAGGCCCACAGACATAGACCTTCATACTCCATAAAGTTGAAGAGAGAAGAAAGAAGCCGAGGA GCACCGGCCCAGCCATTTTAGCTGAGACTCCAGAGCGTTCACTCAGACAGCGGAGAGCTGTGGAGAGAGA GAGAGAGAGCAGGGCGCACACGTCCCATGGATTTAGTCACAAAGTTGCCACAAAATATCTGGAAGACTTT TACACTTTTCATAAACATGGCAAATTATCTCAAGCGCCTCATCAGCCCGTGGTCTAAATCTATGACTGCT GGTGAGTCACTTTATTCCAGCCAGAACTCATCCTCTCCAGAAGTCATTGAAGATATTGGTAAGGCGGTGA CAGAGGGAAATTTACAGAAAGTGATAGGTATAGTCAAAGATGAAATTCAGAGTAAGTCAAGATACAGAGT AAAGATTGCTGTGACTGGGGACTCTGGCAATGGCATGTCATCTTTCATCAATGCCCTTAGGTTCATTGGA CATGAGGAGGAGGAGTCAGCTCCCACTGGGGTGGTGAGGACCACTAAGAAACCAGCCTGCTACTCCTCTG ACTCCCACTTTCCCTATGTGGAGCTGTGGGACCTGCCTGGCTTAGGGGCCACAGCCCAGAGTGTGGAGAG CTACCTGGAGGAGATGCAGATCAGCACATTTGACCTTATCATCATCGTAGCTTCTGAGCAGTTCAGCTCA AATCATGTGAAGCTGGCCATAACCATGCAGAGGATGAGAAAGAGGTTCTATGTCGTCTGGACCAAGCTGG ACAGGGACCTCAGCACAAGTACCTTCCCTGAACCCCAGCTACTGCAGAGTATCCAAAGGAATATCCGGGA GAATCTCCAGCAGGCTCAGGTGAGGGACCCCCCCCTATTCCTGATATCCTGTTTTAGCCCGTCTTTTCAC GACTTCCCAGAGCTTAGAAACACACTGCAAAAAGACATCTTCAGCATCAGGTACAGAGATCCCTTAGAGA TCATTTCTCAAGTCTGCGACAAGTGCATCAGCAATAAGGCGTTCTCTCTGAAGGAAGATCAGATGCTCAT GAAAGACCTGGAGGCAGCTGTCAGCTCCGAGGATGACACTGCCAACCTGGAGAGGGGTCTCCAGACCTAC CAGAAGGTCTTTGGTGTGGATGATGGGTCACTTCAGCAGGTGGCTCGGAGTACAGGGAGACTGGAGATGG GCTCCAGGGCTCTGCAGTTCCAGGACTTGATCAAGATGGACAGGAGACTGGAGCTGATGATGTGTTTTGC CGTGAACAAGTTCCTCAGGGTTCTCGAAAGCTCATGGTGGTATGGCTTGTGGAACGTCGTCACCCGCTAC TTCAGACACCAGAGGCACAAGCTCGTCATTGAAATAGTGGCTGAGAACACCAAGACCTCCCTGAGGAAAG CTCTAAAGGACTCTGTCCTCCCTCCCGAAATTCACTGAGAAGAGTCTGGCTCACCCTCAGGTGGAATTCA GGCTGCCTCAGGGTCTTTTTGCTTAGAGCCCTAGCTAGTCACTAGAAAGGAACAACAGCTGAGGCAACAG CTTGTAATGATGCTTAATAATTTTAGAGGAAATGGCCCATCTTCCTATATTCAACTGTAATAGCCCGTTC CTTCAAAGTGCAAGTATTTGCCAGGATAATCAGCCAAGGTTTCCTAGTTCAGTACCTAGATTGTTAGGCT TTTAGTCTTCATTGTGATGCATGTTTAAA
Notes:	The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CAACATAGATAGAGCAGGGTCTGAG; Reverse Primer - name:unspecified, sequence:TTTAAACATGCATCACAATGAAGAC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	NMRI
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:9379 same embryo
	EMAGE:9382 same embryo
	EMAGE:9381 same embryo
	EurExpress:euxassay_018336 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source