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EMAGE:9411

Nup160 nucleoporin 160 ( MGI:1926227)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9411
euxassay_018363_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9411Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9411_wholemount_weak.wlz
9411_wholemount_possible.wlz
9411_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9411_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50768
Entity Detected:Nup160, nucleoporin 160 ( MGI:1926227)
Sequence:sense strand is shown

>T50768
AGGAATAATTGAATCACGTGCTAGAGCTGTGGACCTTATGACTCACAATTACTATGAACTTCTTTATGCT
TTTCACATTTACCGCCATAATTACCGAAAAGCTGGTACAGTGATGTTTGAATATGGTATGCGTCTTGGCA
GAGAGGTACGAACTCTTCGGGGACTTGAGAAGCAAGGCAACTGTTACCTAGCCGCTATCAATTGTTTACG
GCTTATTCGTCCAGAGTATGCGTGGATCGTACAGCCAGCCTCTGGGGCAGTGTCTGATCGCCCTGGAGCA
TCTCCTAAGCGGAATCATGATGGCGAGTGCACAGCTGCCCCAACCAATCGGCAAATTGAAATTCTGGAAT
TGGAAGATCTCGAGAAAGAATATTCTTTAGCTCGCATTCGCCTCACGTTGGCTCGGCATGATCCATCAGT
GATTGCCATTGCAGGAAGTTCATCAGCAAAGGAGATGAGCGCACTCTTGGTTCAGGCTGGCCTCTTTGAT
ACTGCCATATCACTCTGTCAGACTTTTACTCTTCCATTAACACCAGTCTTTGAAGGGCTTGCTTTCAAGT
GCATTAAGTTGCAGTTTGGAGGAGAAGCAGCACAAGGAGAAGCGTGGTCCTGGCTAGCAACCAATCAGCT
GTCGTCTGTCATCACCACCAAGGAGTCCAGTGCTACAGATGAAGCATGGAGGCTATTGTCAACTTACTTG
GAAAGATACAAAGTCCAGAATAACTTGTATCATCATTGTGTGATTAACAAGTTGTTGTCTCATGGAGTTC
CTCTGCCTAATTGGCTTATAAACAGTTACAAGAAGGTTGATGCTGCCGAGTTGCTTCGTCTTTACCTGAA
CTATGACCTTTTAGAAGAAGCTGTGGATTTGGTCTCTGAATATGTAGATGCTGTATTAGGAAAAGGACAT
CAGTACTTTGGAATTGAGTTTCCACTGTCAGCAACAGCCCCGATGGTATGGCTCCCATACTCTTCTATTG
ACCAGCTTCTCCAGGCTCTGGGAGAGAACAGTGCCAACAGTCACAACATTATACTGTCCCAGAAAATTCT
TGACAAACTAGAAGACTACCAGCAAAAAGTTGACAAGGCAACGCGAGATTTACTGTACCGTCGGGACTTG
TGATCTGGATAGCTGCTCAGCTCTGTAACCTTGGTGCCTCTTAGGGCTTAAGACTACGCTACAGAAACCC
TGTCCTCAAGGCCAGTTTTTCTAACTATAAACGATGTGTCTGGCGCCCAAGTCTGCATTCTGCACAAACA
AAGAAAACAAAGTCAGGACCGACCCTGTGCTTGCTTGTGGTGCTAACACGGTTTCTGGTTTTCAAACTTC
GTCTCTAACAGCTGCTTTTGTATATGATTCTCAACCTTTTTCAGAGTTTATATTTTTTTAAACTACCGAA
GACATCCTTTATCTGCAAACAGAAACTCACCTTCACTTCCCGTAATAGCTAATGGTTGTTGGTTTGTTAC
AGCTGACCACCAAATTGTCACTGCGTATCCTTTCATTTTTCCTTACCTTTTTTTATATTTCAGTGGATTT
GTTTTGGTCCAGAACTAACATCTATTTTCTGTACTGCAAACAAAGGCTAGTGGTTTTACATACTCCTTTC
ATTATTTATTGTAGAGTTTTTCATATGACCGTCAATAAAGTATTAGGTAATATGCATAGATTAAGAATAA
ATTATGACCAGCTTTTTAAGGAAAATATATTTTGAATCTGGCTAAGGCTAAAGTTGAAAAAAACTAATGT
CCATCTATAAAAGAAACAAATTTTCATTTTCAAATTGTATTAATTTATGTGATTTATAATAATCAAGCTG
GACTTGATCATACAGTTAGTGTGATAATATATTGGACCAAAATGGGATTTACCAGTCAGAATCAGAAACA
TTCATGCATACAAACTTTGGGAAAGGTG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:unspecified; Reverse Primer - name:unspecified, sequence:unspecified. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_018363 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS