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EMAGE:9526

Xbp1 X-box binding protein 1 ( MGI:98970)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9526 EMAGE:9526 EMAGE:9526 EMAGE:9526 EMAGE:9526
"Pseudo-wholemount" of euxassay_018391. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018391_01 euxassay_018391_02 euxassay_018391_03 euxassay_018391_04
EMAGE:9526 EMAGE:9526 EMAGE:9526 EMAGE:9526 EMAGE:9526
euxassay_018391_05 euxassay_018391_06 euxassay_018391_07 euxassay_018391_08 euxassay_018391_09
EMAGE:9526 EMAGE:9526 EMAGE:9526 EMAGE:9526 EMAGE:9526
euxassay_018391_10 euxassay_018391_11 euxassay_018391_12 euxassay_018391_13 euxassay_018391_14
EMAGE:9526 EMAGE:9526 EMAGE:9526 EMAGE:9526 EMAGE:9526
euxassay_018391_15 euxassay_018391_16 euxassay_018391_17 euxassay_018391_18 euxassay_018391_19
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euxassay_018391_20 euxassay_018391_21 euxassay_018391_22 euxassay_018391_23 euxassay_018391_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9526Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9526_wholemount_strong.wlz
9526_wholemount_moderate.wlz
9526_wholemount_weak.wlz
9526_wholemount_possible.wlz
9526_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9526_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T51221
Entity Detected:Xbp1, X-box binding protein 1 ( MGI:98970)
Sequence:sense strand is shown

>T51221
CAAATGTCCTTCCCCAGAGTCTGCTAGTCTGGAGGAACTCCCAGAGGTCTACCCAGAAGGACCTAGTTCC
TTACCAGCCTCCCTTTCTCTGTCAGTGGGGACCTCATCAGCCAAGCTGGAAGCCATTAATGAACTCATTC
GTTTTGACCATGTATACACCAAGCCTCTAGTTTTAGAGATCCCCTCTGAGACAGAGAGTCAAACTAACGT
GGTAGTGAAAATTGAGGAAGCACCTCTAAGCTCTTCAGAAGAGGATCACCCTGAATTCATTGTCTCAGTG
AAGAAAGAGCCTTTGGAAGATGACTTCATCCCAGAGCTGGGCATCTCAAACCTGCTTTCATCCAGCCATT
GTCTGAGACCACCTTCTTGCCTGCTGGACGCTCACAGTGACTGTGGATATGAGGGCTCCCCTTCTCCCTT
CAGTGACATGTCTTCTCCACTTGGTACAGACCACTCCTGGGAGGATACTTTTGCCAATGAACTTTTCCCC
CAGCTGATTAGTGTCTAAAGAGCCACATAACACTGGGCCCCTTTCCCTGACCATCACATTGCCTAGAGGA
TAGCATAGGCCTGTCTCTTTCGTTAAAAGCCAAAGTAGAGGCTGTCTGGCCTTAGAAGAATTCCTCTAAA
GTATTTCAAATCTCATAGATGACTTCCAAGTATTGTCGTTTGACACTCAGCTGTCTAAGGTATTCAAAGG
TATTCCAGTACTACAGCTTTTGAGATTCTAGTTTATCTTAAAGGTGGTAGTATACTCTAAATCGCAGGGA
GGGTCATTTGACAGTTTTTTCCCAGCCTGGCTTCAAACTATGTAGCCGAGGCTAGGCAGAAACTTCTGAC
CCTCTTGACCCCACCTCCCAAGTGCTGGGCTTCACCAGGTGTGCACCTCCACACCTGCCCCCCCGACATG
TCAGGTGGACATGGGATTCATGAATGGCCCTTAGCATTTCTTTCTCCACTCTCTGCTTCCCAG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CAAATGTCCTTCCCCAGAG; Reverse Primer - name:unspecified, sequence:CTGGGAAGCAGAGAGTGGAG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EurExpress:euxassay_018391 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS