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EMAGE:9675

Nr0b1 nuclear receptor subfamily 0, group B, member 1 ( MGI:1352460)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675
"Pseudo-wholemount" of euxassay_018482. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018482_01 euxassay_018482_02 euxassay_018482_03 euxassay_018482_04
EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675
euxassay_018482_05 euxassay_018482_06 euxassay_018482_07 euxassay_018482_08 euxassay_018482_09
EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675
euxassay_018482_10 euxassay_018482_11 euxassay_018482_12 euxassay_018482_13 euxassay_018482_14
EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675
euxassay_018482_15 euxassay_018482_16 euxassay_018482_17 euxassay_018482_18 euxassay_018482_19
EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675 EMAGE:9675
euxassay_018482_20 euxassay_018482_21 euxassay_018482_22 euxassay_018482_23 euxassay_018482_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9675Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9675_wholemount_strong.wlz
9675_wholemount_moderate.wlz
9675_wholemount_weak.wlz
9675_wholemount_possible.wlz
9675_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9675_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
adrenal cortex
moderate moderate
regionalmoderate expression: see section 17 18 weak expression: see section 08 09 10 11 19
hypothalamus mantle layer
moderate moderate
regionalmoderate expression: see section 15 weak expression: see section 12 13 14
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50755
Entity Detected:Nr0b1, nuclear receptor subfamily 0, group B, member 1 ( MGI:1352460)
Sequence:sense strand is shown

>T50755
TCCTGTACCGCAGCTATGTGTGCGGTGAAGAGCAGCCCCAGCAGATCAGCGTTGCCTCTGGCACGCCCGT
GAGCGCAGACCAAACACCAGCGACCCCGCAAGAGCAGCCGAGGGCTCCCTGGTGGGACGCCTCACCTGGT
GTGCAGCGTCTGATCACACTCAAGGATCCACAGGTGGTGTGCGAGGCAGCGTCCGCTGGCCTGTTGAAGA
CCCTGCGCTTTGTCAAGTACTTGCCCTGCTTCCAGATCCTGCCCCTAGATCAGCAGCTGGTGCTGGTGCG
GAGCTGTTGGGCGCCCCTACTCATGCTTGAGTTGGCCCAAGATCACCTGCACTTCGAGATGATGGAGATC
CCGGAGACCAACACGACGCAGGAAATGCTTACCACCAGGCGGCAGGAGACCGAAGGTCCAGAGCCTGCAG
AGCCCCAGGCCACAGAGCAGCCACAGATGGTGTCCGCGGAGGCTGGGCACTTGCTCCCAGCTGCTGCGGT
CCAGGCCATCAAGAGTTTCTTTTTCAAGTGCTGGAGTCTGAACATTGACACCAAAGAGTATGCCTATCTG
AAAGGGACCGTGCTCTTTAACCCAGACCTGCCTGGCCTGCAGTGCGTGAAATACATTGAGGGTCTTCAGT
GGAGAACCCAGCAGATCCTTACTGAGCACATCCGGATGATGCAGAGAGAGTACCAGATCAGATCCGCTGA
ACTGAACAGTGCCCTTTTCCTGCTGAGATTCATCAATAGCGATGTCGTCACTGAACTCTTTTTCAGGCCC
ATCATTGGTGCAGTCAGCATGGATGATATGATGCTGGAGATGCTCTGTGCAAAGCTGTGAAGGCATATGT
CCACTCAAGTGCATTTTACTATAGATGGAGAAAGCGGTCGTA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TCCTGTACCGCAGCTATGTG; Reverse Primer - name:unspecified, sequence:TACGACCGCTTTCTCCATCT. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9676 same embryo
 EMAGE:9674 same embryo
 EurExpress:euxassay_018482 same experiment
 MGI:4826779 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS