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EMAGE:9715

Rarg retinoic acid receptor, gamma ( MGI:97858)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715
"Pseudo-wholemount" of euxassay_018429. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018429_01 euxassay_018429_02 euxassay_018429_03 euxassay_018429_04
EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715
euxassay_018429_05 euxassay_018429_06 euxassay_018429_07 euxassay_018429_08 euxassay_018429_09
EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715
euxassay_018429_10 euxassay_018429_11 euxassay_018429_12 euxassay_018429_13 euxassay_018429_14
EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715
euxassay_018429_15 euxassay_018429_16 euxassay_018429_17 euxassay_018429_18 euxassay_018429_19
EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715 EMAGE:9715
euxassay_018429_20 euxassay_018429_21 euxassay_018429_22 euxassay_018429_23 euxassay_018429_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9715Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9715_wholemount_strong.wlz
9715_wholemount_moderate.wlz
9715_wholemount_weak.wlz
9715_wholemount_possible.wlz
9715_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9715_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50922
Entity Detected:Rarg, retinoic acid receptor, gamma ( MGI:97858)
Sequence:sense strand is shown

>T50922
AGGCAGCAGACTGACCATTTCCCAGATACCGCCAGTGACTGGGGGAGGACCTGCCCCGCCCACTCTCCAC
CCTTTTAATGAGCTCGTTATTTTGCCAAAGTTTCTAGGGGTGCCTGTGTTCATCCCTGTCCTGTTCTAAC
TGGCTCCCTCTACAGTCCCGCGGGGATCTGCTGCACACCTACCAGAAGAGCTGGAGAAGGGGCGAGCCTG
GGTCTAGACTCTAAAATCTCAGCACTGCCTTTCGGATTCAGGCCACAGGCTCCCGACGCAAGAGGAAGCC
CCGCCTTCCCATAGCCTTTTCCTCTGCCAGGTGCTTGGGCCTCTGGGAGCAAACAGGAACACTAGAGACC
AAAAGGGGGGCCCCCCCCGAGGGGAGGGCTGAGCCACCCTTGTGCCCCACCCTGAGCGCCTGACTCTGTG
TGATGAATCTGCCGCGCTCAGTGCCCCCGGTGCCCCATCCTAATCCTCCTGCCGGGTGTAGGGGCAGGCT
GGGGCCTGCGTTTTCTAGGGTGGGGCCTGAGGGGAAGGGAGAATGTGAGCCCGAGCCCGTCTGTACCTCT
GCTGAAGTACAGCACTCATCCTGGGCCCTCCATTATATAAGCCTCTCCCTTACTTCTGTCTCGTGCCTTG
GCCTCCCGCCCTCATCTCAGCCATCAGGCAGGGCCCTCCTACACTACAGAGGGGCCAGGGGTCCCTCTCC
TAGTGCCTTCTACCCTTGATCCCCCCAGAGCAGCTTGGCCCCGGGGAGGGGAGATGCTGCTTAGCTGATC
CCACCTTGACCCAGAGGAAGCCTCTATTTATTTATTAGCTTTTGTTTACACCCTGGAAATGACCCCTTCC
TCCAGGGGTCTTGGGAGGGGGAGCCCAGGGCCTCTGTGACCCCTTCCTTTCTTTCCCCAAG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:AGGCAGCAGACTGACCATTT; Reverse Primer - name:unspecified, sequence:CTTGGGGAAAGAAAGGAAGG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9717 same embryo
 EMAGE:9716 same embryo
 EMAGE:9718 same embryo
 EurExpress:euxassay_018429 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS