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EMAGE:9758

Ifnar2 interferon (alpha and beta) receptor 2 ( MGI:1098243)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758
"Pseudo-wholemount" of euxassay_007191. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007191_01 euxassay_007191_02 euxassay_007191_03 euxassay_007191_04
EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758
euxassay_007191_05 euxassay_007191_06 euxassay_007191_07 euxassay_007191_08 euxassay_007191_09
EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758
euxassay_007191_10 euxassay_007191_11 euxassay_007191_12 euxassay_007191_13 euxassay_007191_14
EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758
euxassay_007191_15 euxassay_007191_16 euxassay_007191_17 euxassay_007191_18 euxassay_007191_19
EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758 EMAGE:9758
euxassay_007191_20 euxassay_007191_21 euxassay_007191_22 euxassay_007191_23 euxassay_007191_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9758Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9758_wholemount_strong.wlz
9758_wholemount_moderate.wlz
9758_wholemount_weak.wlz
9758_wholemount_possible.wlz
9758_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9758_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
liver left lobe
moderate moderate
regionalmoderate expression: see section 01 02 03 04 05 06 07 08 09 10
liver right lobe
moderate moderate
regionalmoderate expression: see section 11 12 13 14 15 16 17 18 19 20 21 22 23 24
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50012
Entity Detected:Ifnar2, interferon (alpha and beta) receptor 2 ( MGI:1098243)
Sequence:sense strand is shown

>T50012
GAAAACGGACTTAAGAGCTGAGCAGGATGCGTTCACGGTGCACCGTCTCTGCCGTCGGTCTCCTCAGCTT
GTGTCTTGTGGTGTCTGCGAGCCTAGAGACTATCACACCGTCTGCTTTTGATGGGTATCCAGATGAACCT
TGCACTATAAACATAACAATACGAAATTCCCGGCTAATTTTATCCTGGGAATTAGAGAACAAGTCTGGCC
CACCCGCTAACTACACCCTCTGGTACACAGTCATGAGCAAAGACGAAAATCTGACGAAGGTTAAGAACTG
TTCAGATACCACGAAGTCATCATGTGACGTGACAGATAAGTGGTTGGAGGGCATGGAGAGCTACGTCGTC
GCCATCGTCATAGTGCACAGAGGGGACTTGACCGTGTGCCGCTGCTCAGACTACATCGTGCCTGCAAACG
CTCCTCTTGAGCCGCCAGAATTTGAGATCGTTGGCTTTACAGACCACATAAACGTGACGATGGAATTTCC
ACCTGTCACTTCCCAAATAATCCAGGAAAAGATGAAGACTACACCCTTTGTCATCAAAGAACAGATAGGG
GACAGCGTTAGGAAGAAGCACGAGCCCAAAGTGAATAATGTCACTGGGAACTTCACATTTGTCCTTAGAG
ACTTACTTCCAAAGACAAACTACTGTGTATCTCTTTATTTTGATGATGACCCCGCAATAAAATCTCCCTT
AAAATGCATCGTCCTTCAGCCTGGCCAGGAATCAGGATTATCAGAATCTGCTATAGTAGGAATAACTACT
TCGTGTTTGGTAGTGATGGTTTTCGTGAGCACTATCGTAATGCTGAAACGGATTGGTTATATATGCCTAA
AAGACAATTTGTCCAATGTCTTGAACTTCCGCCACTTTTTAACCTGGATAATCCCTGAACGGTCACCTTC
AGAAGCCATCGATCGGCTGGAAATCATCCCCACAAACAAGAAGAAGAGACTGTGGAATTACGATTATGAG
GATGGCAGTGACAGTGACGAG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:unspecified; Reverse Primer - name:unspecified, sequence:unspecified. The reverse primer contains a 5' extension containing an T7 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using T7 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9759 same embryo
 EurExpress:euxassay_007191 same experiment
 MGI:4825522 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS