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EMAGE:9789

Csnk2a2 casein kinase 2, alpha prime polypeptide ( MGI:88547)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9789 EMAGE:9789 EMAGE:9789 EMAGE:9789 EMAGE:9789
"Pseudo-wholemount" of euxassay_018707. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018707_01 euxassay_018707_02 euxassay_018707_03 euxassay_018707_04
EMAGE:9789 EMAGE:9789 EMAGE:9789 EMAGE:9789 EMAGE:9789
euxassay_018707_05 euxassay_018707_06 euxassay_018707_07 euxassay_018707_08 euxassay_018707_09
EMAGE:9789 EMAGE:9789 EMAGE:9789 EMAGE:9789 EMAGE:9789
euxassay_018707_10 euxassay_018707_11 euxassay_018707_12 euxassay_018707_13 euxassay_018707_14
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euxassay_018707_15 euxassay_018707_16 euxassay_018707_17 euxassay_018707_18 euxassay_018707_19
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euxassay_018707_20 euxassay_018707_21 euxassay_018707_22 euxassay_018707_23 euxassay_018707_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9789Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9789_wholemount_strong.wlz
9789_wholemount_moderate.wlz
9789_wholemount_weak.wlz
9789_wholemount_possible.wlz
9789_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9789_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50206
Entity Detected:Csnk2a2, casein kinase 2, alpha prime polypeptide ( MGI:88547)
Sequence:sense strand is shown

>T50206
AGTATAGTGAAGTATTTGAGGCCATTAACATCACCAACAATGAGAGGGTGGTTGTAAAAATTCTCAAGCC
AGTGAAGAAAAAGAAGATAAAACGAGAGGTTAAGATTCTGGAGAACCTTCGTGGTGGAACAAATATCATT
AAGCTGATTGACACTGTAAAGGACCCTGTGTCAAAGACACCAGCTTTGGTATTTGAATATATCAATAATA
CAGATTTTAAGCAACTCTACCAGATCCTGACTGACTTTGATATCCGGTTTTATATGTATGAACTACTTAA
AGCTCTGGATTACTGCCACAGCAAGGGAATCATGCACAGGGATGTGAAACCTCACAATGTCATGATAGAT
CACCAACAAAAAAAGCTCCGACTGATTGATTGGGGTCTGGCAGAGTTCTATCATCCTGCTCAGGAGTACA
ATGTTCGAGTGGCCTCGAGGTACTTCAAGGGACCAGAGCTCCTTGTGGACTATCAGATGTATGATTATAG
CTTGGACATGTGGAGCTTGGGCTGCATGTTAGCGAGCATGATATTCCGAAAGGAGCCATTCTTCCACGGG
CAGGACAACTATGACCAGCTTGTTCGAATTGCCAAGGTTCTGGGGACAGATGAACTATATGGTTATCTGA
AGAAGTACCACATAGACCTAGATCCACACTTCAATGATATCCTGGGACAACATTCACGGAAGCGCTGGGA
AAACTTTATCCATAGTGAGAACAGGCACCTTGTCAGCCCGGAGGCCCTAGATCTTCTTGACAAGCTCCTG
CGGTACGACCATCAACAGAGATTGACCGCCAAAGAGGCCATGGAGCACCCATATTTCTACCCGGTGGTGA
AGGAGCAGTCCCAGCCTTGTGCTGAGAACACCGTGCTTTCCAGTGGTCTCACCGCAGCACGATGAAGCCT
GGGGAATCGACGGTCTGTTGCGGTTCCTCCCACT
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:AGTATAGTGAAGTATTTGAG; Reverse Primer - name:unspecified, sequence:AGTGGGAGGAACCGCAACAG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9786 same embryo
 EMAGE:9788 same embryo
 EMAGE:9787 same embryo
 EMAGE:9785 same embryo
 EurExpress:euxassay_018707 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS