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EMAGE:9854

Pdk1 pyruvate dehydrogenase kinase, isoenzyme 1 ( MGI:1926119)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854
"Pseudo-wholemount" of euxassay_018748. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018748_01 euxassay_018748_02 euxassay_018748_03 euxassay_018748_04
EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854
euxassay_018748_05 euxassay_018748_06 euxassay_018748_07 euxassay_018748_08 euxassay_018748_09
EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854
euxassay_018748_10 euxassay_018748_11 euxassay_018748_12 euxassay_018748_13 euxassay_018748_14
EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854
euxassay_018748_15 euxassay_018748_16 euxassay_018748_17 euxassay_018748_18 euxassay_018748_19
EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854 EMAGE:9854
euxassay_018748_20 euxassay_018748_21 euxassay_018748_22 euxassay_018748_23 euxassay_018748_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9854Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9854_wholemount_strong.wlz
9854_wholemount_moderate.wlz
9854_wholemount_weak.wlz
9854_wholemount_possible.wlz
9854_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9854_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50901
Entity Detected:Pdk1, pyruvate dehydrogenase kinase, isoenzyme 1 ( MGI:1926119)
Sequence:sense strand is shown

>T50901
TACAGCTGGTGCAAAGTTGGTATATCCAAAGCCTTCAGGAGTTGCTTGATTTTAAAGACAAAAGTGCTGA
AGATGCTAAAACTATTTATGAATTCACAGACACAGTGATAAGGATCAGAAACCGGCACAATGATGTCATT
CCCACCATGGCCCAGGGTGTGACTGAATACAAGGAGAGCTTCGGGGTGGATCCTGTCACCAGCCAAAATG
TTCAGTACTTTTTGGATCGATTCTACATGAGTCGCATCTCAATTAGAATGCTACTCAACCAGCACTCCTT
ATTGTTCGGTGGAAAAGGAAGTCCATCTCATCGAAAGCACATTGGAAGCATAAATCCAAACTGCGACGTG
GTGGAGGTCATTAAAGATGGCTATGAGAACGCTAGGCGGCTTTGTGATTTGTATTATGTTAACTCTCCTG
AACTTGAACTTGAAGAACTAAATGCGAAATCACCAGGACAGACAATACAAGTGGTTTATGTACCATCCCA
TCTCTATCACATGGTGTTTGAACTGTTCAAGAATGCCATGAGAGCGACCATGGAGCACCACGCGGACAAA
GGCGTTTATCCCCCGATTCAGGTTCACGTCACGCTGGGCGAGGAGGATCTGACTGTGAAGATGAGTGACC
GGGGAGGCGGTGTTCCACTGAGTAAGATCGACAGACTCTTCAACTACATGTACTCAACCGCACCCCGGCC
TCGTGTTGAAACGTCCCGTGCTGTGCCCCTGGCTGGGTTTGGTTACGGATTGCCCATATCACGCCTCTAT
GCACAGTACTTCCAGGGAGACCTAAAGCTGTATTCCTTAGAGGGCTACGGGACAGATGCGGTTATCTACA
TTAAGGCTCTGTCTACAGAATCCGTCGAGAGACTCCCTGTGTACAATAAAGCCGCCTGGAAGCATTACAA
AGCCAACCACGAGGCTGACGACTGGTGTGTGCCCAGCCGAGAGCCGAAAGACATGACCACATTCCGAAGC
TCTTAAACGCACATGGGACGCCTGGCACATCCACATGTGGTTTCTGCTAAATTTGGAAGACATGTATTTG
GAACCACACTGTTCCAAATATTTCACGTGTGATCTTCACAATTAGTGTTTGCTGAAGCTCCTAAAGGATC
GGTTATGCCAACTG
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:TACAGCTGGTGCAAAGTTGG; Reverse Primer - name:unspecified, sequence:CAGTTGGCATAACCGATCCT. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9857 same embryo
 EMAGE:9856 same embryo
 EMAGE:9855 same embryo
 EurExpress:euxassay_018748 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS