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EMAGE:9872

Riok3 RIO kinase 3 (yeast) ( MGI:1914128)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9872 EMAGE:9872 EMAGE:9872 EMAGE:9872 EMAGE:9872
"Pseudo-wholemount" of euxassay_018808. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_018808_01 euxassay_018808_02 euxassay_018808_03 euxassay_018808_04
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euxassay_018808_05 euxassay_018808_06 euxassay_018808_07 euxassay_018808_08 euxassay_018808_09
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euxassay_018808_10 euxassay_018808_11 euxassay_018808_12 euxassay_018808_13 euxassay_018808_14
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euxassay_018808_15 euxassay_018808_16 euxassay_018808_17 euxassay_018808_18 euxassay_018808_19
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euxassay_018808_20 euxassay_018808_21 euxassay_018808_22 euxassay_018808_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9872Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9872_wholemount_strong.wlz
9872_wholemount_moderate.wlz
9872_wholemount_weak.wlz
9872_wholemount_possible.wlz
9872_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9872_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T50979
Entity Detected:Riok3, RIO kinase 3 (yeast) ( MGI:1914128)
Sequence:sense strand is shown

>T50979
CGACTAGTACAGCGGTGACGGACGGCAGCTGCCATAGCCAGCGAGTGGAGGTGACCTGACATACCAAAGC
AGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTGCAATTTTTAACT
CGGCATTGAAAGAATAAAATGTCACTACCTCTCATCTTACAAAAAGGATAATATAATTCTTTAACAGGTA
TAGATGTGTAGCCACAGGAGTCTGGATTTTATACAACTCATGATCTGAAGTGTCTAGATGAGGATTTTCA
CATAGGCAGTGTTTCCAAATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCT
CTGCTCCATTCCGCTCGCCTCCTGCTTTCCCTTGCGTCTTTGGGTGGATGTTGCTGTTTTAAATTAGCCC
TTCCTAGCTGTTTGACCGTGAGCGTGGAGACCCCAGTGGGTACTAGAAATGGGCACTTGGCCTCAGTGGA
TGGTGGAAATGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACATTTCCGTCTCATA
GCCAGGAGAGGTGACAGGTTTCTGAAAGATAAATATAAAAGGATTTCTTAACTACATTTTAAAACTTAAC
TTTCAGGTTTTCTTCATTAGGTTAAATGGTTGGTTATTTACATTTATAATGAGAATACAAAGTATCTGGA
AGGGCAGAAGGTAAGAATGGGATCTGCTACATTTTAAGAAGGCAGTGAAACATTTCCGTTTACGTTTCCC
CCAATTGTTCACATATTGATTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTCAGTA
AGTGGAAGACACAGCCTGAACAGCTCAAGTACTGAATTGACCGGCTAACTCGGCTGTGGGCCTCTGCCAG
CGTCACACTGGCTGGACTCGGCCTGAGAAGGTGAGCCTTGTTCTGAAGACCAGTGCTTGCTTGCTCTCAC
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CGACTAGTACAGCGGTGACG; Reverse Primer - name:unspecified, sequence:GTGAGAGCAAGCAAGCACTG. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:9873 same embryo
 EurExpress:euxassay_018808 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS