EMAGE mouse gene expression spatial database

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EMAGE:9940

Fam102a family with sequence similarity 102, member A ( MGI:2138935)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_008174. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_008174_01	euxassay_008174_02	euxassay_008174_03	euxassay_008174_04

euxassay_008174_05	euxassay_008174_06	euxassay_008174_07	euxassay_008174_08	euxassay_008174_09

euxassay_008174_10	euxassay_008174_11	euxassay_008174_12	euxassay_008174_13	euxassay_008174_14

euxassay_008174_15	euxassay_008174_16	euxassay_008174_17	euxassay_008174_18	euxassay_008174_19

euxassay_008174_20	euxassay_008174_21	euxassay_008174_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

9940_wholemount_strong.wlz

9940_wholemount_moderate.wlz

9940_wholemount_weak.wlz

9940_wholemount_possible.wlz

9940_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:9940_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

rib

moderate

regional

moderate expression: see section 05 06 weak expression: see section 04 07 08 09 21 22

submandibular gland primordium

weak

regional

weak expression: see section 07 08 09 18 19 20 21

heart ventricle

strong

spotted

strong expression: see section 08 09 10 11 14 moderate expression: see section 13 weak expression: see section 12

mandible

moderate

regional

moderate expression: see section 04 05 06 07 08 09 10 11 12 19 20 21 22 weak expression: see section 18

maxilla

moderate

regional

moderate expression: see section 06 07 08 09 10 11 12 19 20 21 22 weak expression: see section 18

basisphenoid bone

moderate

regional

moderate expression: see section 01

vault of skull

moderate

regional

moderate expression: see section 01 02

orbito-sphenoid

strong

regional

strong expression: see section 06 22 moderate expression: see section 01 02 03 04 05 07

clavicle

moderate

regional

moderate expression: see section 10 11 weak expression: see section 09 18 19

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T245
Entity Detected:	Fam102a, family with sequence similarity 102, member A ( MGI:2138935)
Sequence:	sense strand is shown >T245 AAATGAACACTGGTGGCAGCCAGAGGCTAAGAGCCTTTCCTCCTGCGCTCAGTGATCCCCACGGGTGCCC AGAGCACCTGGACTTCAAATTCTATATACAAAGATAGAGGATATATTAGAGGTATTTTTGGAAAGGAATT GGTCTATGCAATGCCAGTTTGGGACCTGTAAGACAGTTTAATGTTTCTATTAGAGAGATATAAAAGATCT GCAATATTTTTAGGGTTCTTTTCTGGTTACCCTACAGCTGACCACGTGGTCTGGCAGGATGAGCAGGCCC ATCTTCCTCTGTGGGGAGAATTTGCTTTTGTGTTATTCCTTTCTAACCAGGTTACCACTGCACCCCATTC CGTGGGCTGTTCGTATCTGTCTCAGCTTATAATAGAAAATTATGTCATATGGGGAAATCAGCCTAGTGTC AATGTTTGGTTTGGGGGTGGAATTAAATGCCGATGTTTTTGTTAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:2651472 using vector specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2651472 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	NMRI
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:9939 same embryo
	EMAGE:9938 same embryo
	EMAGE:9937 same embryo
	EurExpress:euxassay_008174 same experiment
	MGI:4824683 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source