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EMAGE:9999

Slc30a4 solute carrier family 30 (zinc transporter), member 4 ( MGI:1345282)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:9999 EMAGE:9999 EMAGE:9999 EMAGE:9999 EMAGE:9999
"Pseudo-wholemount" of euxassay_019696. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_019696_01 euxassay_019696_02 euxassay_019696_03 euxassay_019696_04
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euxassay_019696_05 euxassay_019696_06 euxassay_019696_07 euxassay_019696_08 euxassay_019696_09
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euxassay_019696_10 euxassay_019696_11 euxassay_019696_12 euxassay_019696_13 euxassay_019696_14
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euxassay_019696_15 euxassay_019696_16 euxassay_019696_17 euxassay_019696_18 euxassay_019696_19
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euxassay_019696_20 euxassay_019696_21 euxassay_019696_22 euxassay_019696_23 euxassay_019696_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:9999Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
9999_wholemount_strong.wlz
9999_wholemount_moderate.wlz
9999_wholemount_weak.wlz
9999_wholemount_possible.wlz
9999_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:9999_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
medulla oblongata basal plate mantle layer
moderate moderate
regionalmoderate expression: see section 10 19 weak expression: see section 11
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T56017
Entity Detected:Slc30a4, solute carrier family 30 (zinc transporter), member 4 ( MGI:1345282)
Sequence:sense strand is shown

>T56017
CGTTGTCTTAAGCCCAGGTGGCCCACGTGTCAGTATTTGTCTTCAGGAGAGCCTTCCCACAGTGGACACA
GTCAAGATCAGAGAGAAACACGAGCATCACTCTCAGTTTTCAGAGAGAACTTTCAGCCAATACTTAGAAA
TACATTTGCAGGTGAGAAAGGTTTTTAAAACCTCAGATCATCCCCTGTCCAGATTTTCTGCATGGGAACA
TGGTAGAGAATATGAGACAGAAATAGACTGAGCAGCTACTGTGAAGAGCTTTGAGTTTCTCAAAATGCCA
GCCAGCATTCTTAGAGATTTTGATCCTGAAGTAACTTCAGCTGTGTTTGGTTTTCTGTATTGATGACCAC
TCGTTCATCAGCATACGATGTTCTTATAGAATCTGAACTCTGCTGTTGACTACCTTGTATGTAGTCAAGA
TAAAGCTACAGAATGTGCCACTACGTATGATACCATTTGGTTCAGTTCATCGTTGGACCACTCTTAGTTA
CAAATAATCAGTGACATCTCACTAGCTCTACTGTGCTAAGTAAGCAGGGAGAAAATCTGGTGTCTAGGAA
ATGGTTTAATATCTCTGTAGCTAGAACACCATTTGCAAACTCATAATCCCACCTCCAGGTCTGTCTAATG
GACCCTATGGGCTTAAGATTTGATTTTGCAGATAGGCATATTGTTTGTGATGTTAGTGGGAGCATGCAAA
CTAGAGAAAAAAAATTGTAGGAATTCCTCAGTATTATGTGTTTCCATTTAGGCAACCCGTCAGTAAGTTA
TGGTTACAAAAGATTTGTTGGAGACCAACAGTCATTTTCTGATTTTTGTGAAGATTGGTGTTTATGGAGA
CCTTGCCAGCTAAATCCATGACAGTGTCTATTTAAATAGTGCAATCAAGAATACCCTGAAATAAATGCAA
CCCAAAGTTGAAATGTGCCAGGATGCCCCTTTTCTACCCAGGAGATATCTTATATTTGGAAAATGTCTGC
CTCTCCA
Notes:The probe template was PCR amplified from E14.5 mouse embryo cDNA using gene specific primers. Forward Primer - name:unspecified, sequence:CGTTGTCTTAAGCCCAGGTG; Reverse Primer - name:unspecified, sequence:TGGAGAGGCAGACATTTTCC. The reverse primer contains a 5' extension containing an unspecified RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using unspecified polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:NMRI
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:MGI:4828190 same experiment
 EurExpress:euxassay_019696 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS