EMAGE mouse gene expression spatial database

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EMAGE:10691

Ppp3ca protein phosphatase 3, catalytic subunit, alpha isoform ( MGI:107164)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_002802. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_002802_01	euxassay_002802_02	euxassay_002802_03	euxassay_002802_04

euxassay_002802_05	euxassay_002802_06	euxassay_002802_07	euxassay_002802_08	euxassay_002802_09

euxassay_002802_10	euxassay_002802_11	euxassay_002802_12	euxassay_002802_13	euxassay_002802_14

euxassay_002802_15	euxassay_002802_16	euxassay_002802_17	euxassay_002802_18	euxassay_002802_19

euxassay_002802_20	euxassay_002802_21	euxassay_002802_22	euxassay_002802_23	euxassay_002802_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

10691_wholemount_strong.wlz

10691_wholemount_moderate.wlz

10691_wholemount_weak.wlz

10691_wholemount_possible.wlz

10691_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:10691_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

glossopharyngeal ix ganglion

weak

regional

weak expression: see section 08

trigeminal v ganglion

moderate

regional

moderate expression: see section 04 18 19 weak expression: see section 05 06 07 08 09 20 21 22 23

dorsal root ganglion

moderate

regional

moderate expression: see section 10 11 18 19 weak expression: see section 13 20

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T1103
Entity Detected:	Ppp3ca, protein phosphatase 3, catalytic subunit, alpha isoform ( MGI:107164)
Sequence:	sense strand is shown >T1103 CGAGNCTGTTGGCCTACTGGAGTAACTTTCGAGCCAGCCCAGAGCCCAGAGCTCCAGCCGAGCGGTTTGC AGCGCGGCGGCGGCGGCGCTGAGTGTCTGGCCCGCCGGTGCGGTCGGGGTGTGCAGTCGGACGGGACGAG CAGCGCGTCGCTGTCCCCCCCTCCCGGTGGCTGGAGATGTCCGAGCCCAAGGCGATTGATCCCAAGTTGT CGACGACCGACAGGGTGGTGAAAGCCGTTCCATTTCCACCAAGTCACCGGCTGACAGCAAAGGAAGTGTT TGATAATGATGGGAAACCTCGTGTGGATATCTTAAAAGCACATCTCATGAAGGAGGGCAGGCTGGAAGAA AGTGTTGCATTGAGAATAATAACAGAGGGTGCTTCGATTCTCCGACAGGAAAAAAACTTGCTGGATATCG ACGCACCAGTCACAGTTTGTGGGGACATCCATGGACAATTCTTTGACTTGATGAAGCTCTTTGAAGTGGG AGGATCTCCTGCCAACACTCGCTACCTCTTCTTAGGGGACTATGTTGACAGAGGGTACTTCAGTATCGAA TGTGTGCTGTA
Notes:	The probe template was PCR amplified from IMAGE:2123527 using vector specific primers. Forward Primer - name:T7-pME18S-FL3-fw, sequence:CGTAATACGACTCACTATAGGGCCTTCTGCTCTAAAAGCTGCG; Reverse Primer - name:T3-pME18S-FL3-rv, sequence:CAAATTAACCCTCACTAAAGGGCGACCTGCAGCTCGAGCAC. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:2123527 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:10692 same embryo
	EurExpress:euxassay_002802 same experiment
	MGI:4827388 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source