Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:10898

Clic1 chloride intracellular channel 1 ( MGI:2148924)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898
"Pseudo-wholemount" of euxassay_003302. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003302_01 euxassay_003302_02 euxassay_003302_03 euxassay_003302_04
EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898
euxassay_003302_05 euxassay_003302_06 euxassay_003302_07 euxassay_003302_08 euxassay_003302_09
EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898
euxassay_003302_10 euxassay_003302_11 euxassay_003302_12 euxassay_003302_13 euxassay_003302_14
EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898
euxassay_003302_15 euxassay_003302_16 euxassay_003302_17 euxassay_003302_18 euxassay_003302_19
EMAGE:10898 EMAGE:10898 EMAGE:10898 EMAGE:10898
euxassay_003302_20 euxassay_003302_21 euxassay_003302_22 euxassay_003302_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:10898Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
10898_wholemount_strong.wlz
10898_wholemount_moderate.wlz
10898_wholemount_weak.wlz
10898_wholemount_possible.wlz
10898_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:10898_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6194
Entity Detected:Clic1, chloride intracellular channel 1 ( MGI:2148924)
Sequence:sense strand is shown

>T6194
GGTGGAGCAGCTGGGTGTGGGGTGCACTGGGCCTGTGGGGAAGCCGTGTTGGAGCGAACTAAAGGGTCTG
ATCGGACTTGGGTTGCGCCGAAGGGGCAGCCCTGAGTCTGCAGGAGAGAATCCCGGACCGTCAGACCCGC
CTTCCCTTGCCCCGGCCCCTCCCAGTTCCCCCAGCGACGGCTGCTTCCTGGTCCCCGACGCAACCATGGC
TGAAGAACAACCTCAGGTCGAACTGTTCGTGAAGGCTGGCAGTGATGGTGCCAAGATTGGGAACTGCCCC
TTCTCCCAGAGACTGTTCATGGTGCTCTGGCTCAAGGGAGTCACCTTCAACGTTACCACTGTGGACACCA
AGAGACGGACAGAGACTGTACAGAAGCTCTGCCCCGGTGGGCAGCTGCCGTTCTTGCTCTATGGCACCGA
AGTGCACACAGACACCAACAAGATCGAGGAATTCCTGGAGGCCATGCTGTGCCCTCCCAGGTACCCAAAG
CTGGCTGCCCTGAACCCTGAGTCCAACACCTCGGGACTGGACATATTTGCAAAGTTTTCTGCCTACATCA
AGAACTCAAACCCAGCCCTCAATGACAACCTAGAGAAGGGACTCCTGAAAGCCCTGAAGGTTCTAGACAA
TTACCTGACATCCCCCCTCCCAGAAGAAGTGGATGAAACCAGCGCCGAAGATGAGGGCATCTCTCAGAGG
AAGTTTCTGGACGGCAATGAGCTCACCCTGGCTGACTGCAACCTGCTGCCAAAGCTTCACATAGTACAGG
TGGTGTGCAAAAAGTACAGAGGCTTCACCATCCCAGAGGCATTCCGTGGAGTGCATCGGTACTTGAGCAA
CGCTTATGCCCGGGAAGAATTTGCCTCCACCTGTCCAGATGATGAAGAGATAGAGCTAGCCTATGAGCAA
GTGGCCAGGGCTCTCAAATGAGCACTTTTTAAAGGGTCCTTCACCCACTCTGTGCTCTCCACAGAGGCTT
CGGGGGTCTTCCACGTTGCTGCATAATGGACACACTCCGAAATAGCCAGTGGGCAGGAAATCCGGGGCAC
TTGTGGGGTGGGGCTGTGGGATAAGGCAAAGGATAGTGGACAAGGGTAAGATTTTTATTTTGGGATGGGG
TGGGTAGGACAACGCATTTCAGTAATAAAATACAGAATGAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3498118 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3498118 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:10895 same embryo
 EMAGE:10896 same embryo
 EMAGE:10897 same embryo
 EMAGE:10899 same embryo
 EMAGE:10900 same embryo
 EurExpress:euxassay_003302 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS