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EMAGE:11001

Impg1 interphotoreceptor matrix proteoglycan 1 ( MGI:1926876)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11001
euxassay_003166_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11001Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11001_wholemount_possible.wlz
11001_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11001_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5403
Entity Detected:Impg1, interphotoreceptor matrix proteoglycan 1 ( MGI:1926876)
Sequence:sense strand is shown

>T5403
GGGTAAACCAGGGAGGTCGTCTGTACTCAGCCGGCACCTGGATTTGATTGTTTTTCATATTTCCGTCACC
TTATTTCTTTAAGTGTGACTTGGTATTGCTCTGTGATTTTTCAGAATTACCAGTATACAGAACCAGAATG
AATTTGCAAATTAAACATGCTATCTTTGTTTTGGGGATTTTTCTCCAAGTTCAAGGAATCAAAGATACCT
CTATTAAAATATTCAGTTCTGAAATTAAAAACATAGACAAAACCCCAAGAATCGAAACAATTGAAAGTAC
TTCAACAGTGCACAAAGTGTCAACCATGAAACGAATATTCGATTTGCCAAAGCTTCGAACCAAAAGATCA
GCACTTTTCCCAGCTGCTAACATCTGTCCACAGGAATCCTTGAGACAGATTTTAGCAAGTCTTCAAGAAT
ATTATAGACTGAGAGTATGTCAAGAAGTCGTGTGGGAAGCATATCGTATCTTTCTGGACCGAATTCCTGA
CACAGAGGAATATCAAGACTGGGTCAGCCTCTGCCAGAAAGAAACCTTCTGCCTCTTTGACATTGGGAAA
AACTTCAGCAACTCCCAGGAGCACCTAGATCTTCTTCAGCAGAGAATAAAACAGAGAAGCTTCCCTGGGA
GGAAAGATGAGACAGCCTCCATGGAGACACTGGAAGCACCTACTGAAGCCCCTGTGGTACCCACAGATGT
TTCCAGGATGTCCCTGGGGCCCTTCCCACTTCCTTCTGATGACACAGACCTCAAGGAGATTCTCAGTGTC
ACCCTCAAGGACATTCAAAAGCCCACAACAGAAAGTAAAACAGAACCTATTCATGTGTCTGAATTCTCAT
CAGAGGAGAAGGTGGAATTCAGCATCTCTCTGCCAAACCACAGGTTCAAGGCAGAGCTCACCAACTCTGG
GTCACCATACTACCAGGAACTGGTGGGACAGTCCCAACTGCAGTTGCAAAAGATATTTAAGAAACTTCCA
GGATTCGGAGAAATCCGTGTATTAGGATTTAGACCAAAGAAAGAAGAAGATGGTTCAAGCTCCACAGAAA
TACAGCTTATGGCCATCTTTAAGAGGGACCATGCAGAAGCAAAAAGCCCTGATAGTCATCTACTGTCTCT
TGATTCCAACAAAATTGAAAGTGAAAGAATCCATCATGGAGTCATAGAAGACAAACAACCAGAAACCTAC
CTCACAGCTACAGACCTCAAAAAACTCATCATACAACTACTAGATGGAGACCTGTCCTTGGTAGAAGGGA
AAATTCCATTCGGTGATGAAGTTACTGGGACACTCTTCAGACCTGTCACTGAACCAGATCTGCCCAAGCC
CCTTGCTGATGTCACAGAGGATGCCACTTTGAGTCCAGAACTTCCTTTCGTTGAGCCTAGGCTTGAGGCA
GTGGACAGAGAAGGATCTGAGCTGCCTGGAATGTCCTCCAAAGACAGTTCTTGGTCTCCACCTGTATCAG
CCTCAATTTCCCGATCAGAAAATCTACCTTCGTTTACACCTAGCATCTTCTCTCTAGATGCTCAAAGCCC
CCCTCCCTTGATGACCACTGGCCCAACAGCACTCATCCCCAAGCCCACTCTCCCCACTATCGATTATTCT
ACCATCCGCCAATTGCCTCTGGAATCGTCACATTGGCCTGCATCCTCCAGTGACAGAGAGCTGATCACAA
GCAGCCATGACACAATCCGAGACCTAGATGGCATGGATGTGTCTGACACGCCAGCCTTGTCAGAAATATC
AGAACTGAGTGGATACGATTCTGCCTCGGGTCAGTTCTTGGAGATGACCACACCCATCCCAACAGTACGG
TTCATCACCACCAGCTCCGAGACCATTGCCACCAAGGGCCAGGAGCTAGTGGTATTCTTCAGCCTGCGTG
TTGCTAACATGCCGTTCTCCTATGACCTGTTCAACAAGAGTTCTCTGGAGTATCAAGCCCTGGAACAACG
ATTCACAGACCTGCTGGTTCCCTATCTACGATCGAATCTTACGGGATTTAAGCAACTGGAAATACTCAGC
TTCAGAAACGGAAGTGTGATCGTGAACAGCAAAGTGCGGTTTGCAAAGGCGGTACCCTACAACCTCACCC
AGGCCGTGCGCGGGGTCTTGGAGGATCTTCGGTCCACCGCAGCTCAAGGGCTCAATCTGGAAATCGAAAG
CTACTCCCTCGACATTGAACCAGCTGATCAGGCGGATCCCTGCAAACTCCTAGACTGTGGCAAATTTGCC
CAGTGTGTAAAGAATGAGTGGACAGAGGAAGCAGAGTGTCGCTGCAGACAGGGACATGAGAGCCACGGGA
CCCTGGACTACCAGACCCTGAACCTCTGTCCCCCTGGAAAGACTTGTGTGGCCGGCCGAGAACAAGCAAC
TCCATGCAGGCCACCAGATCACTCTACAAACCAAGCTCAGGAACCTGGTGTTAAAAAGCTACGTCAGCAA
AATAAGGTAGTCAAGAAAAGAAATTCTAAACTATCAGCTATAGGATTTGAAGAATTTGAAGACCAGGACT
GGGAGGGAAATTAAAAGCTGGAATCATATGCATTATGTTGCAAACTCTGTTGAAAGGAAACTTTATTTCT
TAAAGAAAGGTGTATCTGTTCTGTTAACTTCTGAAAAACAGAGGGAGAGATTCAGTGGTCATTGGAATAC
AGGCATGTAATCAACTTTGAGACTCAGCATGCTTGAACAAGAGCACAGGCGTGTATTTGATGACAGTTAA
GCCTGGTTGGGGCGGGGGGCACATATTTTTAGTCAAAACTCAAAGCAATCATTGGAACACATTTGACTAT
TTTTGGACAGTACTCAAGTAGCAAAGATAAGGTTAGCTTTTTTCTTTCTTTAAATTATTACATAAAGCTT
ATTTCAAATAAATACAACTTGTTTAGTGGGTTGTACAATAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:5366008 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:5366008 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11000 same embryo
 EMAGE:10997 same embryo
 EMAGE:10996 same embryo
 EMAGE:10999 same embryo
 EMAGE:10998 same embryo
 EurExpress:euxassay_003166 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS