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EMAGE:11070

C87499 expressed sequence C87499 ( MGI:2140706)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11070
euxassay_006490_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11070Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11070_wholemount_weak.wlz
11070_wholemount_possible.wlz
11070_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11070_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T8079
Entity Detected:C87499, expressed sequence C87499 ( MGI:2140706)
Sequence:sense strand is shown

>T8079
AAGAGGTAATCCGAGCCTGGAGTCACAGCCTTCCCTTGTCTGAATATGATCTGTCACCAGTGTCCCGATC
GGCATGACTCTTTAGAAGAGGAAACAATGAATGCCTACTCCCCACCCACCCTCCTGCAGCTGGCAAGGCA
GAAGCTACTGAGGGAGGAGGCCTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAGAGCTGCTACCAGAG
ATGTTTGAGGAGGCCTTCACTGATGAATGTACAAAGACCTTAAGGGCCATGATACCTATGTGGCCCTTCC
CATGCCTTCCTGTAGGAACGCTGATAAAGAACCCCAACCTGGAGACTTTGAAGGCTGTGCTTGAGGGACT
AGATATACTGCTTGCACCAAAGGTTCGCTCCAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAG
CACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATGAATGCTTACCACAGTTGACACAGAAGC
AGCCAGTGGAGAATAGTCCTGACTGTGGAGTGAAGAAACATTTGCAGGTGACAACTGACTTCGAACTCAC
GAAGGGCAGACTTGATGAATCTGCTACATACTTGTTGCAGTGGGCTGAGCAGAGAAAAGATTCCATTCAT
TTATGCTGTAGAAAGCTGCAGATTCAGGGCTTATCCAAAGACGCATTCATAGAAATCTTCAAAATTATAG
ATGCAAACTGTGTGCAGGAGCTGGAGCTAAGTTGTATCTGGGAAGAAGAGTTGCCTTTTCTTAATCCCTA
CCTGAGACAGATGAAAAATCTTCTCACTCTCAAGCTAGATGACATCACAGAAGTTACTATGGATGGTGAT
GATTTGTTTGACGAGAAGAAAAGGCGCAAGTTGATTTCTCAGCTTTTCTCATTCTACTGTCTCCAGAATC
TCTATGTAGATGGTACCTTTGCAGAAGGAAATATGATAGAATGCCTCAGGTACCTGAAGAAGCCCTTGGA
GACTTTGTGCCTCCGATACTGTTTTCTCTCACAGACGGACTTGGATTACCTGCCTCATTGCCTGAATATT
TGTAAGCTCAAACATCTGAGTCTGAGTTATATATATTTATTTAATTTATTCCTTGAGCCTCTTGGGATTC
TTCTTGAGAGAGTTAGAGATACCCTGCAAACCCTGGAATTGCAATTATGTGGATTGACGGACCGTCATTT
CAGTGTCCTCCTGCCTGCCTTAAGCCAATGCTCCCACCTCACAAAGATCAATTTCTATGAAAATACCATC
TCTCTACCTGTTCTGAAACAACTTTCGTACCACACAGCCAACCTGAGCCAGCTGACTCAGGAACAGTACC
CTGCCCCTCAGGAGTGCTATGATAACATGCGTGGAGTTGAAACACACAGATTGGGAAACATATGCACTGA
GCTTCTGGATATACTCAGGGCCAAAAGACAGCCCGAGAGAGTTGCCTTTGCTACATCCCGTTGCATTAAA
TGTCGTGGCTTCTTGGTCTATGATCTGGAGACCCAACGTTGCTTTTTCCAGCACTAAATAGTGTAAAGTT
GATTGTGGAACTGAGAAATGGAAGCTTAGTAGTGGGGATTGATGAAATCCTAAGTGAATGTACATTGCTG
AGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCTTTCTCTGAGC
TGGTGAGTGGATGTTGCATCTACAGGAAAATATCAAGCACACTCTTTCCTTCTCCAGGATTATTGTGGTT
TGACAGTATTACAAGAGGCACTCTTCTATGAGGAGCTTGTCCCCCTCCGTTGATTTTATACAATAAATGT
GATGACTTTCATTCTAAAAAAAAAAAAAAAG
Notes:The probe template was PCR amplified from IMAGE:30053512 using vector (pSPORT1) specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30053512 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11069 same embryo
 EMAGE:11072 same embryo
 EMAGE:11068 same embryo
 EMAGE:11071 same embryo
 EurExpress:euxassay_006490 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS