Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:11279

Arf1 ADP-ribosylation factor 1 ( MGI:99431)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279
euxassay_006623_01 euxassay_006623_02 euxassay_006623_03 euxassay_006623_04 euxassay_006623_05
EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279
euxassay_006623_06 euxassay_006623_07 euxassay_006623_08 euxassay_006623_09 euxassay_006623_10
EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279
euxassay_006623_11 euxassay_006623_12 euxassay_006623_13 euxassay_006623_14 euxassay_006623_15
EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279
euxassay_006623_16 euxassay_006623_17 euxassay_006623_18 euxassay_006623_19 euxassay_006623_20
EMAGE:11279 EMAGE:11279 EMAGE:11279 EMAGE:11279
euxassay_006623_21 euxassay_006623_22 euxassay_006623_23 euxassay_006623_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11279Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11279_wholemount_strong.wlz
11279_wholemount_moderate.wlz
11279_wholemount_weak.wlz
11279_wholemount_possible.wlz
11279_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11279_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7050
Entity Detected:Arf1, ADP-ribosylation factor 1 ( MGI:99431)
Sequence:sense strand is shown

>T7050
CCACGCGTCCGCCCACGCGTCCGGCAGCCGCCGCGGAGGTCTTTGGCCAGTATCGATTCCACCTGTCCAC
AAACATGGGGAATATCTTTGCAAACCTCTTCAAGGGCCTTTTTGGCAAAAAAGAAATGCGCATTCTCATG
GTGGGCCTGGATGCTGCAGGGAAGACAACAATTCTATACAAACTTAAGCTGGGCGAAATTGTGACCACCA
TTCCCACCATTGGTTTCAATGTGGAGACTGTTGAATACAAGAATATCAGCTTCACCGTGTGGGATGTGGG
CGGCCAGGACAAGATCCGGCCGCTGTGGCGCCACTACTTCCAGAACACCCAAGGCTTGATCTTCGTAGTG
GACAGCAATGACAGAGAGCGTGTGAACGAGGCCCGTGAAGAGCTCATGAGGATGCTAGCTGAAGATGAGC
TCCGAGATGCTGTTCTCTTGGTGTTTGCCAACAAGCAGGACCTCCCCAATGCCATGAATGCGGCCGAAAT
CACAGACAAGCTGGGGCTGCACTCTCTACGCCACAGGAACTGGTACATTCAGGCCACCTGTGCCACCAGC
GGGGACGGGCTCTATGAAGGACTAGATTGGCTGTCTAATCAGCTCCGGAACCAGAAGTGAACCAGACCCC
TCCCTCCCCCTCACTTCCTCTTCTCCGCCCTCAGCTTTCCTCTCATGTGGCAAACGTGCGACTCTGTGGT
CCTGAGTGCCAGAAGCTGTCTCCATGGGTTGGTCACAGTGTGCATCGCACCGTGCTGTACATGTGCAGAC
GCAGCCTGCAGCCAGGTTTTTATTTAATGTAAATAGTTTCTGTTTCCACTGAGGCAGTTTCTGGTACTCC
TATGCAATATTACTTAGCTTTTTTATTGTAAAAAGAGAATCAACTCAACTGTCAGTACTGAGAAGGGATT
TGGGTGTAGGGGCACCTGGCCTCCGGGAGCCATTGGGCTGTAGACTGGTGTCGGTATCCATTTGGTGGTT
GGTTTTTAACCCAAACTCAGTGCATTTTTTAAAAATAGTTAAAAATACAGGACAAGAACACTTGAACACA
CAGAACGGAGACTATGCCTAGTGTAGGTTTTGCAGTTAATGGCCTGAATGCTAGTTATCAGATCACCTGT
TTCGCTGTGGGAACAGGAGAGAAGGTGATGAACAAACCACCATCCGCTGCATGGTCACAGTAGAGCCCCC
GTGACTCGCCTGTCTTTGGGTCACCTGCATTCCATAGCATTGTGCTTGTACTTGTGCTCACACGGTTACC
TAGGGTAGGCTGGGAGCCATTGTGGGGTGCAGGGCCTGGCTTGTACTTGGTGTGTGCAAGGCCCAATGGC
AGCCTGCATACCCAGCCTACTCTTGGGCCCACTTGGACGCGCTGGCAGGAGGCCTGGGTCTCACCAGCAG
GAGTGCGTGCAAGGTGGGAGGGTCGGTCCATTACAGACCCACATCCTGGAGCACCCCCATCTCCATGTGT
GAAGTAGCTTCCTCCCTCAGCCTGCAAGGGTCCGATTTGCCATCGAAAGACGACCTCTACTTTTTTCTTT
TGTATTTTGATAAACACTGAAGAAGCTGGAGCTGTTAAATTTATCTTGGGGAAATCTCAGAACTGGTTTA
TTTGGTGTCGTGGAACCTCTTACCGCTTTCAATACACAATTAGTAATCAACTGTTTTGTATACTTGTTTT
CAGTTTTCATTTCGACAAGCACTGTAATTATAGCTGTTAGAATAAAGTCTCTTAACTATTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4009585 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4009585 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11278 same embryo
 EurExpress:euxassay_006623 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS