Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:11305

Podnl1 podocan-like 1 ( MGI:2685352)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11305
euxassay_006485_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11305Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11305_wholemount_moderate.wlz
11305_wholemount_weak.wlz
11305_wholemount_possible.wlz
11305_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11305_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7956
Entity Detected:Podnl1, podocan-like 1 ( MGI:2685352)
Sequence:sense strand is shown

>T7956
GTGTGTGTGCGCGCTCTGTGCTGAGAGATGGAGGGCAATTGTAGTCACAGCAGACACTGGAGGACGTGAG
TGCTGGACAGAAGCTGGGGAGAGGCACAGCAGGGCTGACTATGAGGCCTCAAGAGCTGCTATTGCTGCTC
CTGATGCTAAAGTGGTCGTTAGCACACACGGAGGACCCTGCCTTCCCACACTTGGGTGACAGCTCACAGC
CCCTCCCAAGGCCCTGTCCTTGGCGCTGCTCCTGTCCCCGAGATGACACGGTGGACTGTGCTGGTCTGGA
CCTGAGGATATTTCCAGACAATATCACCAGAGCTGCTAGGCACCTCTCCTTGCAGAACAACCAGCTTCGG
GAGCTCCCCTACAACGAGCTGTCCCGCCTCAGCGGCTTGCGCACCCTGGACCTGCATAGCAACCTCATCA
CCTCTGAGGGCCTGCCTGATGAGGCCTTTGAGTCCCTCAACCAGCTAGAGAACTTCTATGTGGCCCACAA
CAAGCTTTCTGTAGCACCCCAGTTCCTGCCACGCTCCCTGCGTGTCGCCGATCTGGCTGCCAATGAAGTG
GTGGAGATCTTTCCTCTCACCTTTGGGGAGAAGCCTGCACTCCGGTCTGTGTACCTCCACAACAACAGAC
TGAGGAACACCGGGTTGCCACCTAACACCTTCCACGGCTCGGAGGCTATTACCACCTTAAGTCTTTCCAG
CAATCAGCTCAGCTACCTACCACCCAGCCTGCCAGCCTCCCTGGAACGGCTTCACCTGCAGAACAATCTT
ATCTCCAAGGTGCCCAGAGGAGCACTGAGCCTCCAGACTCACCTCCGTGAGTTGTATCTCCAGCATAATC
AGTTGACAGACAGTGGTCTGGATGCAACTACCTTCAGCAAGCTGAGCAGCCTTGAGTACTTGGACCTGTC
CCACAACCAGCTGGCCACAGTACCCGAGGGTCTGCCGGGAACTCTGACCATATTGCACCTGGGTCGCAAC
TGCATCCGGCATGTGGAAGCTGTAAGGCTGCACAAAGCAAGGGGTCTGCGCTACCTGCTGCTGCAGCATA
ATAAGCTGGGGGCCTCGGCGCTGCCCAAGGGGACGCTGAGGCCTCTGCGAGCCCTGCACACGTTGCACCT
CTATGGCAACAAGCTGGAGCGTGTGCCTCCCGCATTGCCCCGCCACTTGCAGGCCCTGGTAATGCCCCAC
AACCACGTGGCCGCGCTGGGTGCGCGGGATCTGGTCTCAGCGAGAGCCTTGGCCGAGCTCAACCTGGCCT
ACAACAGCCTGGCCAGCGCACGCGTACATCCCAGCGCTTTCCGCCGCCTGCGCGCCCTGCGCAGCTTGGA
CCTGGCTGGTAACCAGTTGACCCGGCTGCCTGAGGGCCTGCCCGCCAGTTTGCGCTCGCTGAGACTGCAA
CGCAACCAACTGCGGACTCTGGAGCCAGAGCAGCTCGCCGGCCTGAATAAGCTGCGGGAACTGAACTTGA
CACACAATCGGCTCCGCGTGGGCGACATTGGGCCTGGCACCTGGCACGAGCTGCAGGCACTTAAGGTGCT
GGACCTGAGCCACAATGAGCTATCTTTTGTGCCCCCTGATCTGCCTGAGGCCCTGGAGGAGCTACACCTG
CAGGCTAACCGTATCAGTCATGTGGGCCCAGAGGCCTTCCTCAGCACCCCCCACCTGCGTGCCCTCTTTC
TCAGGGCTAACAGGCTTCATATGACCAGCATCGCAGCCGAGGCCCTTCAGGGGCTTACACACCTGCGTGT
GGTTGACACTGCAGAAAACCCGGAACAGGTCCTGGTCCAGCTGCCACGCAAGGGCAAGGAGCCCTGAGCC
CTGGAGGGTGGGGGAAGGGGGGTAGGTGGCCAAGTAGCCCTGGCCTAAGCTCTGAGACTGTGGACTAAGA
AAGCTCTCAGCTGCGGCCTAAGAGGCTGTGCCTGTCCTGCCCAGAGCTGGCCAAAGCAGTAGGAGCAGGT
GTCTGCTGTAAGAGGTGGTTAGGGGCTGAAACGGAAGCATGCGGACTTGAACGTTCTGGGGCGCAGACTA
CACCCTCCAGCACAGATGGTGATGAGGAAATAAAGCAGATGCCCTCTCATGTTCACAGGGGACTCAGTCC
CAGTGAGCCCGACCCATCTCTTCCCTACAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30288186 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30288186 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11306 same embryo
 EMAGE:11302 same embryo
 EMAGE:11301 same embryo
 EMAGE:11304 same embryo
 EMAGE:11303 same embryo
 EurExpress:euxassay_006485 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS