EMAGE mouse gene expression spatial database

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EMAGE:11469

Rbak RB-associated KRAB repressor ( MGI:1927369)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_006880. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_006880_01	euxassay_006880_02	euxassay_006880_03	euxassay_006880_04

euxassay_006880_05	euxassay_006880_06	euxassay_006880_07	euxassay_006880_08	euxassay_006880_09

euxassay_006880_10	euxassay_006880_11	euxassay_006880_12	euxassay_006880_13	euxassay_006880_14

euxassay_006880_15	euxassay_006880_16	euxassay_006880_17	euxassay_006880_18	euxassay_006880_19

euxassay_006880_20	euxassay_006880_21	euxassay_006880_22	euxassay_006880_23	euxassay_006880_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

11469_wholemount_strong.wlz

11469_wholemount_moderate.wlz

11469_wholemount_weak.wlz

11469_wholemount_possible.wlz

11469_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:11469_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

strong

ubiquitous

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9136
Entity Detected:	Rbak, RB-associated KRAB repressor ( MGI:1927369)
Sequence:	sense strand is shown >T9136 GAGATTTACTGCAACAATACGGTTTGTTTCCCTTCCGGGCTTTGTAGCATAAAGTAAGGTATGCAGTGTT AATGGTTAACTGGACCAGTGAGCTCGGGTGCCCGCTCTGTGTGATCTATCTGATTCTGATCATGTCGTTG CAGGGCCCACTGTCATTCAAGGATGTGGCTGTGGCCTTCTCCCAGGAGGAGTGGCAGCAGCTGGACCCTG AGGAGAGGACCACATACAGGGATGTGATGCTGGAGACCTACAGCAACCTCGTCTCCGTGGGGTATGACGT TACCAAGCCAAACATGATTATTAAGTTGGAGCAGGGAGAAGAGCCCTGGACAGTGGAAGGTGACCGCCAT GCTCAGAGGCATTTGGAAATCAGTAAAGTTTATGACCCCAGAGAAGGAATTGAGGAAATTGGCGAGAAAC ATCTGCAGTGCGATGATGATCCCTACTGCTGGAGAGCTGAGAAGGGGGCTGCTTTTGATGAAGCCTACAC CCTCGAAACAGCCCTCATTTCCCCCAGCTCAGGTGCTCACAGCTGTGTCTCCTGTGGGGAGACCCTGGAG TCTGTTTCAGAACTGATTAGCAGTGACGGAAGCTATGCACTGGAGAAGCCCAGCATGTGTTTTGAGTGTG GGAAAGCATACGGAGAAAGCCTTGAAGACTTCAACCAAGATGAGGGTAACTCCTCTCAACACGATGAAAA TATTTTGCAGAAAGTCACCATTTTGGAGAAACCCTTTGCTTATGAGTGCATGGAAGCCTTAGACAGTGAA AGTGTTTTCATGGCTCGTGAGAGAGCTTACATGGGGGAGAAGCCCTATGACTGGGGAGACTCTGGACCAG ACTTCATCCAGATGTCGGACTTCAGTACATATCCGAGATCACAAATGGAACTGAAGCCCTTCGAATGTAC ACAGTGTGGGAAGTCCTTCTGTAAGAAGTCCAAATTCATCATCCACCAGAGAGCTCACACAGGAGAGAAG CCGTACGCTTGTAGTGTGTGTGGAAAGTCCTTCAGTCAAAAGGGAACCCTCACTGTACATCGGAGATCGC ACTTAGAGGAGAAGCCCTATAAGTGTAATGAGTGTGGGAAGACCTTTTGTCAGAAGTTACACCTCACACA GCACCAGAGGACTCACTCAGGAGAGAAGCCCTATGAATGTAGCGAGTGCGGGAAGTCCTTCTGCCAGAAG ACACACCTCACTCTCCACCAGAGGAATCACTCAGGCGAGAGGCCCTACCCGTGTAATGAATGTGGGAAAT CCTTCTCCCGGAAGTCTGCCCTCAATGACCATCAGAGGACACACACAGGAGAGAAGCTCTATAAGTGTAA TGAGTGTGGGAAATCCTACTACCGGAAGTCCACCCTCATTACACACCAGAGGACACACACAGGGGAGAAG CCCTATCAGTGTAGTGAGTGTGGGAAATTCTTCTCTCGGGTGTCGTACCTCACCATACACTATCGGAGCC ATTTAGAAGAGAAACCTTACGAGTGTACAGAATGTGGGAAAACCTTCAATCTAAACTCTGCTTTCATTAG GCACTGGAAGGTCCATGCAGAAGAGAGAGTCCAGGAGTGTGGCGAGTGTGGGAAGCCATCCCCGCTGCAG TGTGCCCCTGATCACACAGGCGACCTAGGAGAGAAGCGCTATGAGTGTAATGAGTGTGGAAAGACCTTCC TTGACAGCTCGGCCTTCCATAGGCACCAGTCCGTCCCTGAAGGGGAGAAAACTTACGAGTGTAATATATG CGGAAAGTCCTTCTCGGATTCGTCATGCTACACTGTGCACTACAGAGGTCATTCCGAAGAGAAGCCCTTC GGGTGCAGTGAATGTGGGAAGACCTTCTCTCATAACTCATCCCTCTTCAGACATCAAAGGGTCCACACCG GCGAGAAGCCGTACGAGTGTTACGAATGTGGGAAGTTCTTCTCTCAGAAGTCGTATCTCACTATCCATCA CCGGATCCATTCGGGAGAGAAGCCCTACGAGTGCAGCAAGTGTGGGAAAGTGTTCTCGCGGATGTCGAAC CTCACCGTACACTACCGAAGCCATTCAGGAGAGAAGCCGTATGAGTGCAACGAGTGTGGGAAAGTCTTTT CTCAGAAGTCGTACCTCACCGTGCATTACCGGACTCATTCAGGAGAGAAACCTTATGAATGTAACGAATG TGGGAAAAAATTCCACCACAGATCAGCCTTCAATAGCCATCAGAGAATTCATAAAAGAGGCACTGTAAAT GTACTCACTGTAGAAAAGCTCTGACATGCCAAGGTTTTTAAATTTTTTTTTGGTTTTGGTTTTGGTTTTT TTGAAACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCATTCTGTAGACCAGGCTGGCCTCGAA CTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCACCACCACTGCCCAGTG ACATCTCAGTTCTTAAGAAAAGCATTTGGTTATAGTGAACATTGGAAGTCCAACAGGTAGTCAAGGGTGG ACCCCCCTCAACCCCCCCCCCCAATTTTCAATATATGTGGTGCTGGGATTCTGGGCCTTTTGCATGCTAT AGACATTCTGCAAGATTCACGAGCTGAGCATCCACGCTCTTGAGTGTGGAGTCCTAAAACAAAGTCCATT TTAACTTGAGCTTTCAGAGAGGAATCTGTGAAGCAACCCATGACCGTATGACTTATGGGACACTAGGTCA TCTTTACAGGAGTGAACCTTTGAAAGTATTTAATATTTATTTTTATTTAAATCGTATTTACATATCAGGG AGTTCTGCTGTGAGCTGTCAGCTCCTGAGTATAACTCGCCTTGGAAACGCACACTAAAAGCCATATTTCT GACCGACGTTACCACGGGTGTTCATGGAAAAGATGTAAGAAGCTATGAGTTCCGAATAAACTTATAAAAT GAAGTCATGAAGCCAGCAGTTGAGCATGAGGGTGACTGAAACACGGCACTTCTGCTGTTCTAGACACGCA ATTGAACAGTCTCTATGCAATGTTTCGCAATCTCGGCTTTGAATCATTTGTGAGAACATGTCAGCAAGGA TTAAAATGACTGTTACAGTGGGTACATGGGTGGGATGTGCTAGCTGATAGGGAAGTACATAGCTTTCTAT GTCGGTGCTTACCCGTAGAGTGGTTTTTGTAAAAATATTTTCAACTGGAATTGAGCAAAAAAATTTTTTA AATACTATTTTGATAAACAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:6825552 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6825552 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:11471 same embryo
	EMAGE:11470 same embryo
	EMAGE:11468 same embryo
	EMAGE:11473 same embryo
	EMAGE:11472 same embryo
	EurExpress:euxassay_006880 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source