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EMAGE:11579

Il1a interleukin 1 alpha ( MGI:96542)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:11579
euxassay_003642_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:11579Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
11579_wholemount_moderate.wlz
11579_wholemount_weak.wlz
11579_wholemount_possible.wlz
11579_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:11579_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6639
Entity Detected:Il1a, interleukin 1 alpha ( MGI:96542)
Sequence:sense strand is shown

>T6639
GCCACTGGTGTTCTCTTACAGAAATCAAGATGGCCAAAGTTCCTGACTTGTTTGAAGACCTAAAGAACTG
TTACAGTGAAAATGAAGACTACAGTTCTGCCATTGACCATCTCTCTCTGAATCAGAAATCCTTCTATGAT
GCAAGCTATGGCTCACTTCATGAGACTTGCACAGACCAGTTTGTATCTCTGAGAACCTCTGAAACGTCAA
AGATGTCCAACTTCACCTTCAAGGAGAGCCGGGTGACAGTATCAGCAACGTCAAGCAACGGGAAGATTCT
GAAGAAGAGACGGCTGAGTTTCAGTGAGACCTTCACTGAAGATGACCTGCAGTCCATAACCCATGATCTG
GAAGAGACCATCCAACCCAGATCAGCACCTTACACCTACCAGAGTGATTTGAGATACAAACTGATGAAGC
TCGTCAGGCAGAAGTTTGTCATGAATGATTCCCTCAACCAAACTATATATCAGGATGTGGACAAACACTA
TCTCAGCACCACTTGGTTAAATGACCTGCAACAGGAAGTAAAATTTGACATGTATGCCTACTCGTCGGGA
GGAGATGACTCTAAATATCCTGTTACTCTAAAAATCTCAGATTCACAACTGTTCGTGAGCGCTCAAGGAG
AAGACCAGCCCGTGTTGCTGAAGGAGTTGCCAGAAACACCAAAACTCATCACAGGTAGTGAGACCGACCT
CATTTTCTTCTGGAAAAGTATCAACTCTAAGAACTACTTCACATCAGCTGCTTATCCAGAGCTGTTTATT
GCCACCAAAGAACAAAGTCGGGTGCACCTGGCACGGGGACTGCCCTCTATGACAGACTTCCAGATATCAT
AAAAGCAGCCTTATTTCGGGAGTCTATTCACTTGGGAAGTGCTGACAGTCTGTATGTACCATGTACAGGA
ACCTTCCTCACCCTGAGTCACTTGCACAGCATGTGCTGAGTCTCTGTAATTCTAAATGAATGTTTACCCT
CTTTGTAAGAGAAGAGCAAACCCTAGTGGAGCCACCCCGACATATGATACTATCTGTTATTTTAAAGAGT
ACCCTATAGTTTGCTCAGTACTAATCATTTTAATTACTATTCTGCATGGCATTCTTAGGAGGATCAAAAA
GACTCTACACATATTACAGATGGGTTAACAAAGGGATAAAACAACTGAAAAGCACACTCAATGCATTTGG
AATATAAATTCACAGACCAATCTCACTGTGCACCTTCGGCTTCAAAATGCCAGTTGAGTAGGATAAAGGT
ATAAGAACTTAATGCTGTCATTTTCAAAAGGAAGGGGACAATAGCTACATCTTTCCTACCTCAGTGGGTT
TTACTCCAGTGAGATCATTTGGATGAAATCCTCCTGTAACAGACCTCAAGAAGGAGACAGACTGTTGAAT
GTTATTTTTAAGTTATTTTATATATGTATTTATAAATATATTTATGATAATTATATTATTTATGGAACAT
CCTTAAATCCTCTGAGCTTGACAGGCATCCTCACAGCAGGATTTTCTAGGTGGTCAGTTAGATATAGTTT
CCTCTAGAGCACCATGCTACAGACTTTACACTTTTTCCACAGCCACGAAGCTCTCTGTACATTCCTGTAC
TTGGGAGCCCTTTCATCATGATCTTAATCTGTACTGTTTACTTTGTTCATCTAAAATGATAATTGAGTCA
GTCTTTTTCCCTCCCATCCTTAAAGCTGTCTGGGTATTCTTACATCATTCAGTCTCACCTGTAACTAACA
CCAACCATCTAAAGATGGAAAGAGCTTAACTGTGACAACCACATCACTGTTACCTGAAGTTTCTTTTCTA
GAATGTAATCAGTGTTTCCCCTGGATTCCAATATTTTTTTCAAACCACAGTATCATGTAACTATCAACAA
TAACAATCAACTCATTATTATTAATCATAATTAAATAAAACAAGTTTGAGCTGAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3599550 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3599550 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:11582 same embryo
 EMAGE:11580 same embryo
 EMAGE:11581 same embryo
 EMAGE:11578 same embryo
 EurExpress:euxassay_003642 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS