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EMAGE:12124

Ccdc96 coiled-coil domain containing 96 ( MGI:1913967)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124
"Pseudo-wholemount" of euxassay_008466. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_008466_01 euxassay_008466_02 euxassay_008466_03 euxassay_008466_04
EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124
euxassay_008466_05 euxassay_008466_06 euxassay_008466_07 euxassay_008466_08 euxassay_008466_09
EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124
euxassay_008466_10 euxassay_008466_11 euxassay_008466_12 euxassay_008466_13 euxassay_008466_14
EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124
euxassay_008466_15 euxassay_008466_16 euxassay_008466_17 euxassay_008466_18 euxassay_008466_19
EMAGE:12124 EMAGE:12124 EMAGE:12124 EMAGE:12124
euxassay_008466_20 euxassay_008466_21 euxassay_008466_22 euxassay_008466_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12124Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12124_wholemount_strong.wlz
12124_wholemount_moderate.wlz
12124_wholemount_weak.wlz
12124_wholemount_possible.wlz
12124_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12124_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Text Annotation:
StructureLevelPatternNotes
nasal cavity olfactory epithelium
moderate moderate
regionalmoderate expression: see section 09 10 18 19 weak expression: see section 11 17 20
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T35644
Entity Detected:Ccdc96, coiled-coil domain containing 96 ( MGI:1913967)
Sequence:sense strand is shown

>T35644
AAAACTTTCCTCCCCTCTTGACAGCCCTTGACAGGACAGTTGGCAAAAACTTCTGCAACCCCAGAAACTC
TCTTACTCTCTTCTGCCTCTGATTGTCCATTCTGTGGAACTTGGGGGTGCAACTTTATTTTTTGGCTGTT
TTCCAGCTTTCAAATTCCTGCTGAACACTTCCAGCTAGCAGTAGCTCTACATGAGCTTAAGAAAAATATA
TCTAGAGAGTGCGGTGATTAAACTGACTTCTAGTGAAAAGCCTTTATAGCCAAGTAGCCCCAGTCTAAAG
GAGTGTTAGAACTGTCTCTTGCCTATGTCTAAGGATGGCTTAAATGAGTGGGCAAGGTACAGAAAATCTC
TATGCACTGATCTGATGACTCAAGTCATCTTTGTACTAATTAAACTTAAGAGTATTGAATCACTGACCTG
ATTAGCTCATAAATTCCCATCTCTCAGTGTGCAGGTGTGTGTGGTCATATGAAGGCCTGAGGAACATATG
GGGCATCTCCTGTATGCCACCTTGATTTTTTTCAGACAGGGTCTCTTACTCAATTGGAACTTTGCCGTTT
GGGCTAGTCCAGCTAGCATGATGATCCTGGGATCTGCTTGTCTCTGTTCCCCAACACCAGGTTTCAGGCA
TGCAAGGCCACGTCTGGCTGTTTTATGTGGATGCCAGGGGTTTGAATTCAGATCCTCATGCTTTAAAACA
AGCACTCTTACTCTGAGTCAAAAGCTGCATCAGCAATCTGACTGTTGGCACTGCATAACTCTGCTTCCTT
CAGATGACATGCCGTACTTTGTTTGCTGAAATATATTGACTTGAAAGTCAATGACAGTTAAAAGTCTCTT
TTCACTTTCATGGCTTGAAAACATTTTTATATCGCACCATACAAATGCATTAGTGAGGACAGTTCAAAAA
GCTGACGTCGTCCATCCCCCTCACTTAGTTGCTAGTTTTG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 71212. Forward Primer - name:071212_F_cDNA_4921513E08Rik, sequence:AAAACTTTCCTCCCCTCTTGAC; Reverse Primer - name:071212_N_SP6_cDNA_4921513E08Rik, sequence:CAAAACTAGCAACTAAGTGAGGG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12127 same embryo
 EMAGE:12126 same embryo
 EMAGE:12128 same embryo
 EMAGE:12125 same embryo
 EMAGE:12123 same embryo
 EurExpress:euxassay_008466 same experiment
 MGI:4823693 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS