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EMAGE:12345

Atp6v0d2 ATPase, H+ transporting, lysosomal V0 subunit D2 ( MGI:1924415)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345
"Pseudo-wholemount" of euxassay_007005. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_007005_01 euxassay_007005_02 euxassay_007005_03 euxassay_007005_04
EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345
euxassay_007005_05 euxassay_007005_06 euxassay_007005_07 euxassay_007005_08 euxassay_007005_09
EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345
euxassay_007005_10 euxassay_007005_11 euxassay_007005_12 euxassay_007005_13 euxassay_007005_14
EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345
euxassay_007005_15 euxassay_007005_16 euxassay_007005_17 euxassay_007005_18 euxassay_007005_19
EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345 EMAGE:12345
euxassay_007005_20 euxassay_007005_21 euxassay_007005_22 euxassay_007005_23 euxassay_007005_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12345Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12345_wholemount_strong.wlz
12345_wholemount_moderate.wlz
12345_wholemount_weak.wlz
12345_wholemount_possible.wlz
12345_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12345_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T10005
Entity Detected:Atp6v0d2, ATPase, H+ transporting, lysosomal V0 subunit D2 ( MGI:1924415)
Sequence:sense strand is shown

>T10005
AGTATGCTTGAGACTGCAGAGCTGTACTTCAATGTGGACCATGGCTACCTGGAGGGCCTGGTTCGAGGAT
GCAAAGCCAGCCTCCTAACTCAGCAGGACTATGTCAACCTAGTGCAGTGTGAGACCTTGGAAGACCTGAA
AATTCATCTCCAGACCACGGACTATGGCAACTTCCTGGCTAATGAAACAAATCCTCTCACTGTTTCCAAA
ATTGACACGGAGATGAGGAAGAAGCTCTGCAGAGAGTTTGACTATTTCCGGAATCATTCCTTGGAGCCCC
TGAGCACATTTCTCACCTACATGACATGCAGCTATATGATAGACAATATAATTCTACTTATGAATGGGGC
CTTGCAAAAGAAATCTGTGAAAGAAGTTCTAGCCAAGTGTCACCCACTGGGCCGTTTCACAGAGATGGAA
GCTGTCAACATTGCAGAGACCCCCTCAGATCTCTTCAAGGCTGTGCTGGTTGAAACACCATTAGCTCCAT
TCTTTCAAGATTGTATGTCTGAAAACACTCTTGATGAACTGAATATTGAATTACTGCGCAATAAACTATA
CAAGTCTTACCTTGAGGCATTCTACAAATTCTGCAAGGATCACGGTGATGTCACAGCAGACGTTATGTGT
CCCATTCTTGAGTTTGAGGCCGACAGACGCGCTTTAATCATCACTCTGAACTCATTTGGCACTGAACTAA
GCAAAGAAGACAGGGAGACCCTCTTCCCCACCTGCGGCAGGCTCTATCCAGAGGGGTTGCGGTTGTTAGC
TCAAGCTGAAGACTTTGAGCAGATGAAGAGAGTGGCAGATAATTATGGAGTTTACAAGCCTTTGTTTGAC
GCTGTCGGTGGCAGTGGGGGGAAGACACTGGAAGACGTTTTCTATGAGAGAGAGGTACAGATGAATGTGC
TGGCATTCAACAGGCAATTCCATTATGGTGTGTTTTATGCGTATGTAAAGTTGAAGGAGCAAGGGATGAG
AAATATCGTGTGGATAGCAGAATGCATCTCACAGAGGCATCGAACTAAAATCAACAGCTACATTCCAATT
TTATAAGCCAGTGTACAGAAGATCATACATGTTGCCATGAAGTTATTGAGGAAAGGAAGGGGGATTGTGT
CACATTATCTAGATTATATAAAAGTAAGTCATACCACCTTTCCATAAACTACATGTCCACTGGAAGCCCA
GTAAACAGAACTTGAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:30504725 using vector (pDNR-LIB) specific primers. Forward Primer - name:M13 forward (-21), sequence:TGTAAAACGACGGCCAGT; Reverse Primer - name:T3-pDNR-LIB rv, sequence:CAAATTAACCCTCACTAAAGGGTGTTCACTTACCTACTGGGC. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30504725 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12343 same embryo
 EMAGE:12348 same embryo
 EMAGE:12346 same embryo
 EMAGE:12344 same embryo
 EMAGE:12347 same embryo
 EurExpress:euxassay_007005 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS