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EMAGE:12403

D130007C19Rik RIKEN cDNA D130007C19 gene ( MGI:3045257)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403
"Pseudo-wholemount" of euxassay_011181. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_011181_01 euxassay_011181_02 euxassay_011181_03 euxassay_011181_04
EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403
euxassay_011181_05 euxassay_011181_06 euxassay_011181_07 euxassay_011181_08 euxassay_011181_09
EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403
euxassay_011181_10 euxassay_011181_11 euxassay_011181_12 euxassay_011181_13 euxassay_011181_14
EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403
euxassay_011181_15 euxassay_011181_16 euxassay_011181_17 euxassay_011181_18 euxassay_011181_19
EMAGE:12403 EMAGE:12403 EMAGE:12403 EMAGE:12403
euxassay_011181_20 euxassay_011181_21 euxassay_011181_22 euxassay_011181_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12403Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12403_wholemount_strong.wlz
12403_wholemount_moderate.wlz
12403_wholemount_weak.wlz
12403_wholemount_possible.wlz
12403_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12403_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T36233
Entity Detected:D130007C19Rik, RIKEN cDNA D130007C19 gene ( MGI:3045257)
Sequence:sense strand is shown

>T36233
GTTATTGTTTTGAGGCAGGGTCTCACCATGTGTGAACTCCCAACTCCACCCCAGGAACCTGGATTTTTTT
CTTCTTCTTTCTTGGGACTTCCTCCTATATTGGAGCCAATCTAACCTTTCCATAGCCCTCTCTTGGGCCC
TCTCTGGAGCTCTAGCTCCTGTCCCAAGCTCTTTAAAAAAAAAAAAAAAAAAAAAAAACCTCATCTTTGG
GTAGACCAATGAGCTGGCTCGGTGGATAAAGCCTGATGTTTGTTGGATCCCTGGAGCTGTCCTATAGAGG
AGAGCCAGGACCTGCAAAGTGCCTCCGGCCTCTACATGTGCTGCAGGCACACACATGCACACAACAAACA
AAGTATTTTTAAATAAAATGATTAGAAAACCTTCACTACTGAGAGTAATGACATGCGCCTTTAATCCTAG
CATTCGTGAGCCAGAGCAGGCAAATCTCTAAACTCAAGGCCAGCCAGAGTCACATGCTGAGATTCTGTCT
CAAGTAGAACAAGCCCATCACCCTTTACCAACCATGAACGCCAAGTCTGCAGACAAGGACTCAGAGCCAC
TGAGTCAGTGGATGCTTTCTGGGACTGGGAGCCTCTGGCAGGTTCCTGAGTTGAGCCCATATGAGATGAG
TCTCCTTTGCATTCCCTTTTTTCCTGTCCCCCATTTACTGACAGATTATAGCTTGCCTGCCCTGTGGTTT
TTCTTTCAAAGTCTATTAAAATGGTCAAGCTTCGTCATTGTCAGGGTCCAGCGGGGTCAGAGTTCTCAAC
TGGAAGCAGGGATATCTGGAAGGCACATAATAAACAGACACAGACTACTTTTCAGGTACAAACTGACAGG
CAATTTTTCAAGGCTTACTCTCTCCTCTCTCTGT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 73437. Forward Primer - name:073437_F_cDNA_D130007C19Rik, sequence:GTTATTGTTTTGAGGCAGGGTC; Reverse Primer - name:073437_N_SP6_cDNA_D130007C19Rik, sequence:ACAGAGAGAGGAGAGAGTAAGCC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12402 same embryo
 EMAGE:12400 same embryo
 EMAGE:12401 same embryo
 EMAGE:12399 same embryo
 EurExpress:euxassay_011181 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS