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EMAGE:12580

5830427D03Rik RIKEN cDNA 5830427D03 gene ( MGI:1923311)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:12580
euxassay_011328_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:12580Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
12580_wholemount_possible.wlz
12580_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:12580_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T37457
Entity Detected:5830427D03Rik, RIKEN cDNA 5830427D03 gene ( MGI:1923311)
Sequence:sense strand is shown

>T37457
GGCAGACCCTTACTTCCTTTTTTGAGACAGGCTGGATTTGAATCTTGCTTTTGTGAGAACACGGGATAGC
AATGCATAGAACTGCGCAAGGTTTCTAGCTACTGCTTAAGGAAGAGGTAGTGCAGCGAGGGGAAGGAGTT
CTCTACTGATGAGAAGGAGAAACTTCTTTAAAGCCAGGGTTGTTAAAGTTGAGGCTGTGGCTGACAGAAA
CTGGGATCTGCTTCCTCACATAGCTTTGGAAGTAGATACCAAGAGGCCTGTGAGTCAGAGCACACCAGTG
CTTTGGCTAACGGTGTGCTTAGAGGCGGGATGCCGCAGTGATTGAAGCTGGGTTGTAGAGACAGACAAGA
TGGGGCCAGGCTCACCTCCTGCCTGTGCTGTCCCGAGCTGTCCCATGCTGTCCTGTTGTATACATTTGAT
AACTTACTTGTTCGCACTTAGGTTTCATTTTTCCTTTTGCATAAGGAGAGTCATGGTAGCAGCTACCTAG
TAGGCTGTCGTGAGAGTTAAATGAGATAAGTGAAAAGTCCTGAGAACTGCATAGGGCACACAGCACATGC
TGACTGCCCACCGTCATGTAGTGTGGCACCAACACTCAGGCAGGGCTGCTGTAAAAGAGAGCTAGTTAGT
AGAAGAGCAGGGTGGGCCTATGTGAAGGGACAGTTGTTACAGTGACTTTACTCAGTGCCTCGTGAGTGGT
AACGTTTTATTCTTGTCTGTATCAGCTCATAGCCGTAGCACGTAATGCTTCAGGGAGAGGTGAAGCTGGA
GCAGGGCAGGGGCCGAGAACATCTTGGATGCAAGGG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 68352. Forward Primer - name:068352_F_cDNA_5830427D03Rik, sequence:GGCAGACCCTTACTTCCTTTTT; Reverse Primer - name:068352_N_SP6_cDNA_5830427D03Rik, sequence:CCCTTGCATCCAAGATGTTCT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:12581 same embryo
 EMAGE:12579 same embryo
 EMAGE:12578 same embryo
 EMAGE:12577 same embryo
 EurExpress:euxassay_011328 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS