EMAGE mouse gene expression spatial database

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EMAGE:12654

Ikbkb inhibitor of kappaB kinase beta ( MGI:1338071)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_011529. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_011529_01	euxassay_011529_02	euxassay_011529_03	euxassay_011529_04

euxassay_011529_05	euxassay_011529_06	euxassay_011529_07	euxassay_011529_08	euxassay_011529_09

euxassay_011529_10	euxassay_011529_11	euxassay_011529_12	euxassay_011529_13	euxassay_011529_14

euxassay_011529_15	euxassay_011529_16	euxassay_011529_17	euxassay_011529_18	euxassay_011529_19

euxassay_011529_20	euxassay_011529_21	euxassay_011529_22	euxassay_011529_23	euxassay_011529_24

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

12654_wholemount_strong.wlz

12654_wholemount_moderate.wlz

12654_wholemount_weak.wlz

12654_wholemount_possible.wlz

12654_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:12654_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Annotation Validation:

spatial mapping by EMAGE editor

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T30339
Entity Detected:	Ikbkb, inhibitor of kappaB kinase beta ( MGI:1338071)
Sequence:	sense strand is shown >T30339 AAATTGCTGCTGGCTTGGCGGGAGATGGAGCAGGCTGTGGAGCAGTGTGGGCGGGAGAATGACGTGAAGC ATCTAGTAGAGCGGATGATGGCACTGCAGACTGACATTGTGGACCTGCAGAGGAGCCCGATGGGTCGGAA GCAGGGGGGCACCCTGGATGACCTAGAGGAACAAGCGAGGGAGCTCTACCGAAGACTCAGGGAGAAGCCA AGAGACCAAAGGACAGAAGGTGACAGCCAGGAGATGGTACGGCTGCTGCTTCAGGCAATCCAAAGCTTTG AGAAGAAAGTTCGGGTGATTTATACACAGCTCAGTAAGACCGTGGTTTGTAAGCAGAAGGCACTGGAGTT GCTGCCCAAGGTAGAAGAGGTAGTGAGCCTTATGAACGAGGACGAGAGGACCGTGGTCCGGCTTCAGGAG AAGCGGCAGAAGGAACTCTGGAACCTCCTGAAGATCGCCTGTAGCAAAGTCCGAGGTCCCGTGAGTGGAA GCCCAGACAGCATGAATGTGTCTCGACTCAGTCACCCTGGTCAGCTAATGTCCCAGCCTTCCAGTGCCTG TGACAGCTTACCTGAATCAGACAAGAAAAGTGAAGAACTGGTGGCCGAAGCCCACGCCCTCTGCTCCCGG CTAGAAAGTGCGCTGCAGGACACTGTGAAGGAGCAAGACAGAAGCTTCACGACTCTAGACTGGAGCTGGT TACAGATGGAGGATGAAGAAAGGTGTAGCCTGGAGCAGGCCTGTGACTGAGGTGCCCATGAGCTGGCCCG TGGCTCTGCATGTGACGATGTTCTGGTATCTCCAGGTGGACATCTCACTCTGCCAGCAGCT
Notes:	The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:4482634), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 33609. Forward Primer - name:033609_F_IRAV81-84_I14_Ikbkb, sequence:AAATTGCTGCTGGCTTGG; Reverse Primer - name:033609_R_SP6_IRAV81-84_I14_Ikbkb, sequence:CAGCTGCTGGCAGAGTGA. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:12653 same embryo
	EMAGE:12656 same embryo
	EMAGE:12655 same embryo
	EurExpress:euxassay_011529 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source