Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:13397

Nkpd1 NTPase, KAP family P-loop domain containing 1 ( MGI:1916797)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397
"Pseudo-wholemount" of euxassay_017530. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017530_01 euxassay_017530_02 euxassay_017530_03 euxassay_017530_04
EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397
euxassay_017530_05 euxassay_017530_06 euxassay_017530_07 euxassay_017530_08 euxassay_017530_09
EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397
euxassay_017530_10 euxassay_017530_11 euxassay_017530_12 euxassay_017530_13 euxassay_017530_14
EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397
euxassay_017530_15 euxassay_017530_16 euxassay_017530_17 euxassay_017530_18 euxassay_017530_19
EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397 EMAGE:13397
euxassay_017530_20 euxassay_017530_21 euxassay_017530_22 euxassay_017530_23 euxassay_017530_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13397Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13397_wholemount_strong.wlz
13397_wholemount_moderate.wlz
13397_wholemount_weak.wlz
13397_wholemount_possible.wlz
13397_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13397_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T37914
Entity Detected:Nkpd1, NTPase, KAP family P-loop domain containing 1 ( MGI:1916797)
Sequence:sense strand is shown

>T37914
CTTTAGCGTGTACTCGGTGCTAGGCAACAAGCCCTGTGGCCCGCGTGATGGCCTCTGCCAACGCGAGTGG
CACTGCCGACGTCGCGTGTGCCTGGCGCTGCTGGCGCTGCTGGCCGCGCTGTGCCTGGGTGTGGGGCTGC
TGTACCTGTCGCTGGGAGGCCACGCGCCGGGCCACGGAGAGCGTGGTGTGCTCAAAGCGCTGGGCGGCGC
GGCCACCACGCTATCCGGCTCAGGGCTGCTCATGGCCGTGTACTCCGTGGGCAAGCATCTGTTCGTGAGC
CAGCGCAAGAAGATCGAGCGCCTGGTGTCGCGTGAGAAGTTTGGCAGCCAGTTGGGCTTCATGTGCGAGG
TGAAGAAGGAGGTGGAACTGCTCACGGATTTCCTGTGCTTCCTGGAGATCTACCAGCGACGCCGGCTGCG
TGTGGTCCTCGAGGTCACTGGGTTGGACACGTGCTACCCAGAGCGCGTGGTGGGCGTCCTAAACGCCATC
AACACTCTGCTGTCCGACAGCCACGCTCCCTTCATCTTCATCCTGGTGGTGGACCCCAGCATTCTGGCCG
CGTGCCTGGAGAGCGCGGGTAACATGAAGGGCACAGCAGACAACGGCTACCTGTTCCTCAACCGCACAGT
CACGCTACCCTTCTCCGTGCCGATTATGGGCCGTCGCACCAAGTTGCAGTTCCTGCACGATGCGGTGCGT
AGCCGGGACGATCTGCTGTTCCGGGAATTGACGATCAAGCTACAGCCGCAGAGCCCCGGGAACTTGGGCG
CAGGTGAGGGTACTCAGCTGCTGG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 81113. Forward Primer - name:081113_F_cDNA_Nkpd1, sequence:CTTTAGCGTGTACTCGGTGCTA; Reverse Primer - name:081113_N_SP6_cDNA_Nkpd1, sequence:CCAGCAGCTGAGTACCCTCAC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13398 same embryo
 EMAGE:13395 same embryo
 EMAGE:13399 same embryo
 EMAGE:13396 same embryo
 EurExpress:euxassay_017530 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS