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EMAGE:13530

Slc24a1 solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 ( MGI:2384871)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530
"Pseudo-wholemount" of euxassay_017761. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_017761_01 euxassay_017761_02 euxassay_017761_03 euxassay_017761_04
EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530
euxassay_017761_05 euxassay_017761_06 euxassay_017761_07 euxassay_017761_08 euxassay_017761_09
EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530
euxassay_017761_10 euxassay_017761_11 euxassay_017761_12 euxassay_017761_13 euxassay_017761_14
EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530
euxassay_017761_15 euxassay_017761_16 euxassay_017761_17 euxassay_017761_18 euxassay_017761_19
EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530 EMAGE:13530
euxassay_017761_20 euxassay_017761_21 euxassay_017761_22 euxassay_017761_23 euxassay_017761_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:13530Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
13530_wholemount_strong.wlz
13530_wholemount_moderate.wlz
13530_wholemount_weak.wlz
13530_wholemount_possible.wlz
13530_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:13530_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4271
Entity Detected:Slc24a1, solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 ( MGI:2384871)
Sequence:sense strand is shown

>T4271
AGGATTCCTAAGGGAGCCGGCAGGAGGAGAATGGGGTGTTCCTTGTGGTTCCACTTCACACCTACTCTTC
GAGACCCCGGATTCTGACAAGTTTCCCGAACTTGGAAGACCCAGATGTCAAGGTCTGAAGGTTTGGGGAT
ACCCCCAGGCTGGGCTTCATGGAGAAACCTTTCCTGATTACTAACATGAATCCCAGAGCAGCCTCTGCCT
CTCCCTGGACAGGATGAGAGGCCAACTGTAACCAGACCTAACCGGCCATCATGGGGAAACTGATCAGGAT
GGGGACACAGGAGAGGCGGTTACTCCGACCAAAGAGGCTTCATTGGAGTCGCCTTCTTTTCCTCTTGGGA
ATGTTGATCATTGGCTCTACTTATCAGCACCTGAGGAGACCCCAGAATCCCCCCTCAATGTGGACAAAGG
TCTCCTCCCAGCAGCCTATTAAACTGGCCGTCAGGGACCTCCCCAACAATGAAATGGCAGTGGCAGGCAG
TGACCCTCCAGAGGCTAGCTCTGAAGTGGAGGATGGGATGCTAGCAGCCCAAGACACAGTGATCATGGAT
GAAGCAGCACCTAGCATAGCAATGGAGGACACCCCCAATCCACCCAGAACAACCAAGATCCCTCCAGCAT
CACTAAAGAACAGTTATAGCCCTACAACAGCTGGCACAAGAAGACAAAAAGAAAACATCCCACCCACACC
TAGTGGAGCACCAAGTCACTTCATCTCAACTCCAGGCAGACAGAGGGTAAAAAGCTATATCCCAAAACCC
AGGGGAGAAAGGAAGAACTCCAGCCCAACTCACGCCAGGGAAAAAGGAAGGACGCATACCCCATCTCCAG
CAGGTGCTCACACCATCAGCCCCACAGCAACTGTGAGAGACAGAGAAACCATGGCAACCTATAGGCTGTT
AGAGACCAGATTTGAGAGAACAGCAGGAGAAACCACAGCAGCTTCTCTCAAGAGAATGGTTCTGAACACA
CCGACCTTCTTAACACATGAAGTAGAAACAAACCTCATGACTTCTTCAAGTTTGGTGGGAAAGAACACTG
CGGTAAGTCTTAGAAAAGGGGAAAGAAACATCTCTACCACTCCCCAGGGAGCGGTCCCACAGCACACCCC
TGCCACCTCTGAGGAGCAAATGACAGTAAGCACCAGGATGGGTAGCATCCCAGCCACCATCGAAGGCTCT
ACTGCTGCCCGGAGAATTAACAATCCCTTGTCCAGAACCAGTGCACCAGCCATTAGAATTGCCTCGGCCA
CCAACAGGGAAAAGAGACCTTCTACAGCACCCAGCACCCTCGTAACTCCCAAGGCAACCATGAGCACACA
AGTCCACCGATGTGTGGTTGTGGAGCCAGCCCCAGCTGTACCCATGACCCCATCTCCAGGCGTGACAAGC
ATCCTGTTCCCAGAGACACCCAGTTCCGGTCCCTCGGCTTTGCCACCCGGCTGGCCAAATCTCCACCCCA
AGGCGGAGTATCCCCCAGACCTGTTCAGTGTGGAGGATCGACGACAGGGCTGGGTGGTCCTACACATCTT
CGGCATGATGTATGTGTTCGTGGCCTTGGCCATCGTGTGCGACGAGTACTTTGTCCCAGCCTTGGGAGTC
ATCACACACAAGCTGCAGATCTCCGAGGATGTGGCAGGGGCCACATTCATGGCTGCCGGAGGCTCGGCCC
CGGAGCTCTTCACCTCTCTCATTGGTGTCTTTATCTCCCACAGCAATGTGGGTATTGGTACCATCGTGGG
CTCTGCTGTGTTCAACATCCTTTTTGTCATCGGCACCTGTGCCCTCTTCTCCCGGGAGATCCTCAACCTC
ACCTGGTGGCCCCTGTTCCGAGACGTCTCCTTCTACATCCTTGACTTGTCTATGCTCATTGTCTTCTTCC
TGGACAGTTTCATTGCCTGGTGGGAGAGCCTGCTGCTGCTGTTGGCCTACGCTCTCTATGTGTTCACCAT
GAAGTGGAACAAGCAGATTGAGCTCTGGGTGAAAGAGCAGCTTAGCAGGAGGCCCGTAGCCAAAGTCATG
GCCCTGGGAGACCTCAGCAAGCCCAGTGAGGATGCTGTCGAGGAAAACGAGCAACAGGACAGCAAGAAAC
TGAAGCTCCCGTCTGTGCTGACCCGAGGGAGTAGCTCGGCCTCGCTGCACAACAGTATCATCCGCAACAC
CATCTACCACCTCATGCTCCACAGCCTGGACCCCCTGGGGGAAGCCCGCCCCTCCAAGGACAAGCAGGAG
AGCTTGAATCAGGAAGCCAGAGTTCTCTCCCAGACCAAAGCAGAAAGCAGCCCAGACGAGGATGAGCCAG
CCGAGCTCCCTGCGGTCACGGTCACTCCAGCCCCTGCTCCAGACGCCAAGGGAGATCAGGAGGACGATCC
AGGCTGCCAGGAAGATGTGGATGAGGCTGAACGCAGAGGAGAAATGACAGGTGAAGAGGGTGAAAAGGAA
ACCGAGACGGAAGGAAAAAAAGATGAACAAGAAGGGGAAACTGAGGCAGAAAGGAAAGAAGATGAGCAAG
AAGAAGAAACTGAGGCAGAAGGAAAAGAACAAGAAGGGGAAACTGAGGCAGAAGGAAAAGAAGATGAACA
AGAAGGGGAAACAGAGGCAGAAGGCAAAAAAGATGAACAAGAAGGGGAAACTGAGGCAGAAGGCAAAGAG
GAACAAGAAGGGGAAACTGAGGCAGAAGGAAAAGAAGATGAACAAGAAGGGGAAACTGAGGCAGAAGGCA
AAGAGGAACAAGAAGGGGAAACTGAGGCAGAAAGCAAAGAAGTTGAACAAGAAAGGGAAACTGAGGCAGA
AGGCAAAGATAAGCATGAAGGGCAAGGTGAAACCCAACCAGACGACACTGAGGTGAAAGATGGTGAGGGT
GAAACAGAAGCCAATGCTGAAGATCAATGTGAGGCCACCCAAGGTGAGAAGGGTGCAGATGGTGGAGGGG
AAAGTGATGGAGGGGACAGTGAGGAAGAGGAGGATGAAGAAGATGAAGAGGAGGAAGAGGAGGAAGATGA
GGAAGAGGAGGAGGAGGAAAATGAGGAGCCTCTGTCTCTGGAATGGCCTGACAGCAGGCAGAAGCAGGCC
ATCTACCTCTTCCTCCTGCCCATCGTGTTCCCACTGTGGCTGACAATACCTGATGTACGGAGGCAGGAGT
CCAGGAAGTTTTTTGTCATCACCTTCCTGGGATCCATCATCTGGATAGCCATGTTCTCATACCTCATGGT
ATGGTGGGCTCACCAGGTTGGCGAAACCATTGGGATTTCTGAAGAGATTATGGGTTTGACAATCTTAGCA
GCAGGCACTTCAATTCCTGACCTCATCACCAGTGTGATCGTTGCCCGGAAAGGCCTGGGAGACATGGCTG
TGTCAAGCTCAGTGGGCAGTAACATATTTGACATCACAGTGGGCTTGCCTGTTCCGTGGCTCCTCTTCTC
CCTCATCAATGCGCTGCAGCCTGTTCCTGTCAGCAGCAACGGCCTGTTCTGTGCAATCGTCTTGCTGTTT
CTCATGCTCCTGTTTGTGATCTTCTCAATTGCATCGTGTAAATGGAGAATGAACAAGATCCTGGGCTTCA
CGATGTTCCTTCTTTACTTTGTGTTCTTGGTAATCAGTGTGATGTTAGAAGATCGAATCATATCCTGCCC
TGTGTCTGTCTGATTCAGCCACTGATGCTCAAGATGGACATAGAGGAGAGGACTATGCCAGAAGTTACCG
TCCCTCTTACCATACCAATCAAATAATGAACATGATCAGGAATGTGAGCCGGGCAGCGTAGACCCTCAGA
GGTGACTGTCATTATGACTGAGGCTTCTCTCTGCAAACACCTGCAGCTTCAGGTGGATTAAGAACGTTAC
CTTGGAAGGGAGAGTTTTTATCACTCAGGCAAGCAGCTGTCATGCAGTCAGAGGACTTCCTGTATGAGAC
CTGAAGTTACAGTTGGGATGGCAGAAATTAGACAAGTACCCTTGCTCACAATTCCCTTGTCACTCCTGAA
GAGCCATGGTGCAGCATGCAGGGGTCAAAGGCTTGTTCTCCTGAACACTGCCCTAAACACACACTGCCAC
ACGCTATTTATTCCTCCTGGTGGAATTGTGAAGCCACATCAGGTTTGCTGTCATTGTGAGTTCAGTTAAT
GAGTTTAAGAAGGGAAGGCTTGGAGGCAGGGGCAGGAATAAATTTATCATTCTACCCCACAGTCCTGTGA
AAACGCATGCCAATGCTTTCTGTGTCAAAAGGAAGATAATAGCTTTTATTGTTGCATTTCTGAAAAATGA
AATTAGAACAGAAAGCAGCCTAGGGAATGAAAGTCTGTAATTTGACTTGAATTGGAGGCAAGGATTTGAG
GAAGAAAACTACTCTTAGGGCTATGTAAACATATGCACTTCCTGGAAAATCCACATTTGTTTGTCTCCAT
CAGTGGCCACTTCAAAGGATTATTCTGACACAGCTGCCCTGCTGCCCTTGGGCATTTTCTTGCCCAGGAG
TGACAACTGTCACTGAAGAGCCAAAGGGATGCATTTGCAGAGGGCCAAATCTGGCGGATGCATGAAGAGA
TCTAGGGCTCAGTGCTATGCTTATATGCCAACCTAGACTAGACTGTAAAGCAAGAAGGCTAGTCCTTTGA
ATAGTTTATCAGTGGGTCTTAAGAGAGTTTACAAAGGAGAAATTTCAAAACTGCTTAGCGCAATGACGAC
ACAGCAAGAAATGAAAGAGTACTGCTCGTTACACAGACCAGGCTGGCCTTGGAGTCACACACCTACCTGC
CCCTGCCTCCTGAGTGCCGGGATTAAAAGATGGCCACTACATCTGGTTGAGTATGTATTTTTAAGGGCAC
AAAGGATACCTTAAGAAGTCATGGTTAAATATTTTCGATGACGTTTCACATGCTTGCATATTAACTATCT
TTGGCCACTGCTTTTCCTACAATCAAGCTGAGGAGAATGTTAGAAATAAAACTTTCACGTCTTTGGTTTC
AGAGCACAAGGAACATGAGCGTCTGCAGATTATGATGCAAATGATGTATGTCATAGACACCAGGAGTGAT
GTGGTAGCCTGTGAGAAAATAGTGGGGTGGGTGGGAAAGAAAAGCAATGGTTCATTCTGGTGATGGAGGG
TGGAGGTACTCAAGTATTCATCTTTTAAGATGGGCTGTACTTCTTCAAAATTCCCATTTTTTTGGAAGTA
ACTTTTATTAAATTTCAATGAAAACTGTGGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4504496 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4504496 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:13528 same embryo
 EMAGE:13527 same embryo
 EMAGE:13529 same embryo
 EurExpress:euxassay_017761 same experiment
 EMAGE:29477 same embryo
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS