EMAGE mouse gene expression spatial database

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EMAGE:14069

Atad1 ATPase family, AAA domain containing 1 ( MGI:1915229)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_001713. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_001713_01	euxassay_001713_02	euxassay_001713_03	euxassay_001713_04

euxassay_001713_05	euxassay_001713_06	euxassay_001713_07	euxassay_001713_08	euxassay_001713_09

euxassay_001713_10	euxassay_001713_11	euxassay_001713_12	euxassay_001713_13	euxassay_001713_14

euxassay_001713_15	euxassay_001713_16	euxassay_001713_17	euxassay_001713_18	euxassay_001713_19

euxassay_001713_20	euxassay_001713_21	euxassay_001713_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

14069_wholemount_strong.wlz

14069_wholemount_moderate.wlz

14069_wholemount_weak.wlz

14069_wholemount_possible.wlz

14069_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:14069_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

thymus primordium

weak

homogeneous

weak expression: see section 09 10 11 12 13

submandibular gland primordium

moderate

regional

moderate expression: see section 05 06 07 16 17

brain

weak

homogeneous

weak expression: see section 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20

glossopharyngeal ix ganglion

moderate

regional

moderate expression: see section 06 16 17

trigeminal v ganglion

moderate

regional

moderate expression: see section 03 04 05 06 07 08 16 17 18 19 20

vagus x ganglion

moderate

regional

moderate expression: see section 07 15

vestibulocochlear viii ganglion

moderate

regional

moderate expression: see section 06 07 16 17

spinal cord

weak

homogeneous

weak expression: see section 07 08 09 10 11 12 13

cervico-thoracic ganglion

moderate

regional

moderate expression: see section 07 13

thoracic ganglion

moderate

regional

moderate expression: see section 09

dorsal root ganglion

moderate

regional

moderate expression: see section 06 07 08 13 14 15

renal cortex

moderate

regional

moderate expression: see section 04 05 06 07 13 14 15 16 17

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T2757
Entity Detected:	Atad1, ATPase family, AAA domain containing 1 ( MGI:1915229)
Sequence:	sense strand is shown >T2757 ATGAGTGTATATCAAATGTATATATCCACTTTTTTTAAATATTCTGTAGATAGGTTTGAATTCAGAAGCT TTTTTCCCCCCAACTACTGAATCCAAAAGCACCAGATAGTCTGTAGCAAAACTGGGATTTAAGGCAGGAT TTGACAGGTCCAGGGAGATTCAGCCATTCCTAGGTGTCACTAGGTGTTTGGGCAGTTTTTTTAAGTTGAA CATTTTTCTCTGCGGTTGGTTGAATCAACTACATCTGAATATGCACGTGTCTCAAGTATAGTGGTTGTCA GGAGAATCAGATGACAAACACAGTTTGCTCAGTGATCAGCAGGGATTATTCCACCTCATCCTGCTGTGAC ACCGAGTAGACTTTTTGAAGTTTTACACTGAATTACATTAAGAAGGATTAAAAACCTTTCAAAAGAATGG GTTTAAGAAACCTCAGTCCTCTTTAATACGTGTACATAATTCTCAGTGTAACAGGTCTGTAACTGTATTA ATGTTGTTTGAAAGTTATATGTTCTTTAATTATGTTCAAATTT
Notes:	The probe template was PCR amplified from IMAGE:1514505 using vector specific primers. Forward Primer - name:RZPD M13 forward, sequence:GCTATTACGCCAGCTGGCGAAAGGGGGATGTG; Reverse Primer - name:RZPD M13 reverse, sequence:CCCCAGGCTTTACACTTTATGCTTCCGGCTCG. Anti-sense probe was then transcribed from the PCR amplified template using T3 polymerase. EMAGE Editor's Note: the partial probe sequence indicated here was given by the EURExpress Consortium and has been checked using BLAST comparison against all available partial insert sequences of IMAGE:1514505 from NCBI. In cases where no BLAST hit was found (because the two sequence reads are found at opposing ends of the insert sequence), both end sequences were then checked against the appropriate cDNA RefSeq to ensure validity of the information.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:14070 same embryo
	EurExpress:euxassay_001713 same experiment
	MGI:4823285 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source