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EMAGE:14189

Rdh11 retinol dehydrogenase 11 ( MGI:102581)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14189 EMAGE:14189 EMAGE:14189 EMAGE:14189
euxassay_003980_01 euxassay_003980_02 euxassay_003980_03 euxassay_003980_04

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14189Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14189_wholemount_strong.wlz
14189_wholemount_moderate.wlz
14189_wholemount_weak.wlz
14189_wholemount_possible.wlz
14189_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14189_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4119
Entity Detected:Rdh11, retinol dehydrogenase 11 ( MGI:102581)
Sequence:sense strand is shown

>T4119
GTCCCGCTGTCCTCTTTAGAGCATCAACTTCAACTGCGCTTCGGTGGTGCTGAGATGTTCGGATTCCTGC
TTCTGCTCTCTCTTCCCTTCATCCTGTACTTGGTCACGCCAAAAATCAGGAAAATGCTGTCCAGTGGGGT
GTGCACATCTAATGTTCAGCTTCCCGGGAAGGTAGCCATAGTCACTGGTGCTAACACAGGCATTGGGAAG
GAGACAGCTAAAGATCTGGCCCAAAGAGGAGCCCGTGTGTATTTAGCTTGCCGGGATGTGGACAAGGGGG
AACTGGCGGCTCGTGAGATCCAAGCCGTCACAGGGAACAGTCAGGTCTTCGTACGGAAACTGGACCTAGC
TGATACCAAGTCTATTCGAGCCTTTGCCAAAGACTTCTTAGCTGAGGAAAAGCATCTGCACCTTCTCATC
AACAATGCGGGCGTGATGATGTGCCCCTACTCGAAGACTGCAGACGGCTTTGAGATGCACATTGGCGTCA
ACCACCTGGGTCACTTCCTCCTGACCCATTTGCTGCTAGAAAAGCTGAAGGAGTCGGCCCCATCAAGGAT
AGTCAACTTGTCTTCTTTGGGACACCATCTGGGCAGGATCCACTTCCATAACCTGCAGGGGGAGAAGTTC
TACAGTGCGGGTCTCGCGTACTGCCACAGCAAACTAGCCAACATTCTCTTCACTAAGGAGCTGGCCAAGA
GGCTGAAAGGTTCTGGAGTGACAACATACTCTGTACACCCTGGCACAGTCCATTCTGAATTGACGCGGTA
CTCCTCTATTATGAGATGGCTTTGGCAACTTTTCTTTGTTTTCATCAAGACCCCTCAAGAGGGAGCTCAG
ACGAGCCTGTACTGTGCCCTGACAGAAGGTCTCGAGAGCCTAAGTGGCAGTCATTTCAGTGATTGCCAGT
TGGCATGGGTCTCTTACCAAGGTCGCAATGAGATAATAGCCAGGCGGCTGTGGGATGTCAGCTGTGACCT
GCTGGGCCTCCCAGTGGATTGGTAAGTGGTGGTTTGGACTCAAAAGAAGATTGGAGGAGATGATGATTAT
CCTTCAAAGTGGCCAAAACCTTGAACCTGAAGAGCGAAGAACTTCAAGCCTTTCCTGCTTGGCATCCAGT
TAAATCCTAGTACACTGCCAGGTTCCTCGAAACCCCTTGAGTTTGTATTGACTTATTTTGTTCCTGCCCC
TGCCAGCGTTTCTAGTGGTATCACTAAGACAGAGGACCTTCATGTGACCTACACAGCTCCTATTTTCCTT
TGGAAACTCCCCCTAACCAGGAGCATGAAAGCCCTATGAAGATTGGTACATGACAATGTGGATTAGATGG
AGCTCCTCCGAGCCGACCATCCTCTCCTTGAAGAACTCCATTGTAACCTCAGCTGAACCTCAGGAGTCCC
GGAGCCTGGCTCAAGGGCAGGCAGGGCTTTGTGGTCCCAACATCTGGATACTTAAGAAAAGTTTTTACTA
AATCTGGCAGTCTGAAGCTTTGGCTTCTGAGACACTTTTCTATGTCCAGACCACTGAAGAGCTTCCTTCT
CTAAGAAATTTGTGGGATTTGAAGGGCAGAGATAAAAATAAAGCCAAACTGTCATTTTCTCCCGCTGTTT
CTCAGCCTAGTAAGGAGGTAATGAAAGGAACGGTATGAGACGATAGGTCACTGGGGTCAGTTACTGACCC
CAGACCCACAGAGGCCTCTTTTTTGTGCCTTAGTTTCTCTTAGGAAACTAGAAAAGGAAAGGCCTTCTCA
TTGTCATTGTGTCGATTTTGTGTGTCTTCTTGTGCATTCATGCAGTTGAATGTGTTTCCACAAAATTCAC
AATAGCCACAAAGGAAAAGTTCTTAATCAGACTGTAGTGTAGACAAATTACCAGAGATGGGACAAATCAC
TGTGGAGTCTTTGAGTACAGTTGCAAAGCAAGGGAGACACTATCTGTGTTGTAATCGGTCACTGAGAAGC
ACAGATGCCGCAGGGAAGAAGTTTAAAAGAAAAATCCTAGGAGGGGACACATGATAATGAAGGGGTCAGC
TGAGGATCTAAAACCATAACGGAAAGGCAGTAATAGACAGCTACAGAAAGGCACACTGTCTTAATCACCA
GTCAGTCAGAGTGATAGGAAAATGTCCAAAGCACAAGAGTGAAATACTTCTCTATTCAGAAATGTTATCC
TAAGGATTGGTAATTATAGTCAGTTCATAATCTTTTAGAGCATTTTCTTACATTAGCTTAACAAGATGTC
CATTTCAGGAATGTGTATGGAGAGATGGGATGGCTTAGTAATGCCTGCTGTTCCAGAGGACCCTGGTTCA
ATTACTAGGACCCACTTGGCAACCACAACCATCTATAACCTCAGTTATAGATGATCTAGAGGATCAGACA
GCCTCATCTACCTCCACAGGCCCTGCAGGAATGTGGTGCATAGATATATATGCAGGCACACATACAAATA
ATTTTGTAAAAAAAAAAGAAATCAATTTTGACTTTGGGGGTATGCTCTCCTGAAATGTTGAGGCCCCTGG
GTTTGATCCCAGCACTGCAAAAGAAAGTAGAGATAGCCTCAATTTACTACGATTCTGCTTTATTTGGAGA
GCTTTTATCAAAAGCAATGCAGACCAAGGGTGTCAGGAATCCCTCATGTTCCCATCACTGGTTTGGAGGA
TGCTATTCTAAGGGAGTTTGCCATTTCCTCGGGCTGACAATTATATTTTAAGCTTGAATATGTAAGACTG
ACAGGACCACAATCTTTAACTTCTAATATTTGTAAATTAATAAATTTATGGGTTTGTTCTGCCCAATAAA
CGTATTTTAAAATTAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4460226 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4460226 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14185 same embryo
 EMAGE:14190 same embryo
 EMAGE:14188 same embryo
 EMAGE:14186 same embryo
 EMAGE:14187 same embryo
 EurExpress:euxassay_003980 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS