Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:14473

Zcchc17 zinc finger, CCHC domain containing 17 ( MGI:1919955)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:14473 EMAGE:14473 EMAGE:14473 EMAGE:14473 EMAGE:14473
"Pseudo-wholemount" of euxassay_005484. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_005484_01 euxassay_005484_02 euxassay_005484_03 euxassay_005484_04
EMAGE:14473 EMAGE:14473 EMAGE:14473 EMAGE:14473 EMAGE:14473
euxassay_005484_05 euxassay_005484_06 euxassay_005484_07 euxassay_005484_08 euxassay_005484_09
EMAGE:14473 EMAGE:14473 EMAGE:14473 EMAGE:14473 EMAGE:14473
euxassay_005484_10 euxassay_005484_11 euxassay_005484_12 euxassay_005484_13 euxassay_005484_14
EMAGE:14473 EMAGE:14473 EMAGE:14473 EMAGE:14473 EMAGE:14473
euxassay_005484_15 euxassay_005484_16 euxassay_005484_17 euxassay_005484_18 euxassay_005484_19
EMAGE:14473 EMAGE:14473 EMAGE:14473
euxassay_005484_20 euxassay_005484_21 euxassay_005484_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:14473Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
14473_wholemount_strong.wlz
14473_wholemount_moderate.wlz
14473_wholemount_weak.wlz
14473_wholemount_possible.wlz
14473_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:14473_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7230
Entity Detected:Zcchc17, zinc finger, CCHC domain containing 17 ( MGI:1919955)
Sequence:sense strand is shown

>T7230
GTTCCTAGCTATGAAGCGGCTGTCCTGCTAGGCGCGGACGCGGAGACGTTTGAATTAGCTTTAGCAGAAG
AGAGATGGAGGAGCCATAGACTGTTAAGGATGAATTCAGGAAGGCCTGAGACCATGGAGAACTTGCCTGC
ACTGTATACTATTTTTCAAGGAGAGGTTGCTATGGTGACAGACTATGGAGCTTTTATCAAAATCCCAGGC
TGTCGGAAGCAAGGTCTGGTCCATCGAACTCACATGTCGTCCTGTCGAGTGGATAAGCCTTCTGAGATAG
TAGATGTTGGAGACAAAGTGTGGGTGAAGCTGATTGGCCGAGAGATGAAAAATGATAGAATAAAAGTGTC
CCTCTCCATGAAAGTTGTCAACCAAGGAACTGGGAAAGACCTCGATCCCAACAACGTTGTCATTGAGCAA
GAAGAGAGGCGCAGACGGTCCTTCCAGGATTACACTGGGCAGAAGATCACCCTTGAGGCCGTCCTGAACA
CGACCTGCAAGAAGTGTGGCTGCAAAGGCCACTTTGCCAAGGACTGTTTCATGCAGCCAGGTGGAACCAA
GTATTCTCTGATTCCTGAAGAGGAAGAGGAAAAAGAGGAGGCAAAGGCAGAAGGACTTGAGAAGCCTGAT
CCCACGAAGAATTCTTCCAGGAAGAGAAAGAAGGAAAAGAAGAAAAAGAAACATAGAGACAGGAAGTCAT
CTGACTGTGATAGCTCTGACTCTGAGAGTGACACGGGCAAGAAGGCGAGGCATTCATCAAAAGACAGCAA
GGCCACCAAGAAGAAAAAGAAGAAGAAGAAGCACAAGAAGAAGCACAAGGAATGAGGATGGAACAGGCCG
CGGCAGCCCTGACTCCTGCAAAGACTCACTAGTGAGAGTGTGGCCTGCCTCCTACCCAGACTTGTCCCCA
TGGTCTCAGATGGCTTCTCCCCCTGCAGCAAGCAGATTGGGGCCCCGCAGGGCCCCTCCCAACATGATTT
TCCCTTGTTGCTCCTGACCCTTTGCAAGCGACCCCTGCAGCCATTGCATTCATGCGCTCAGTGTCTTCAT
TTCAGCAGAAGGTTCTAGTCCCAACCGGCTGCCACTGCCCGAGCTGGAGTCCTCTGCAGGAGTCCATGCT
GGAGCCCCGGGTGCTGCTGTGGAGGGGAGCCTGGCCGTGAGAGAGAGAGCAGCCCCAACCTGCCTGCTGT
CTGCGGTGGCTGTGGGTGGACTCTGCGGCCTCCATCCCCTCAGCCAGGGCCTGTACTCCAGTGACTGCTG
AACCAGAGATTTGCAGCCACGGTCATTGCTCTGCTTCCTGTCTGTCACAGTGTGAGTGACTGGTTCCATT
TCAAGCCTCTGCTTAAACTCCTGGCATAAATGGAAATGTGTTTGGTTTTAAACTTTCCAAAAAAAAAAAA
AAA
Notes:The probe template was PCR amplified from IMAGE:4161178 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4161178 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:14471 same embryo
 EMAGE:14472 same embryo
 EurExpress:euxassay_005484 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS