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EMAGE:15128

Zzef1 zinc finger, ZZ-type with EF hand domain 1 ( MGI:2444286)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15128 EMAGE:15128 EMAGE:15128 EMAGE:15128 EMAGE:15128
"Pseudo-wholemount" of euxassay_010281. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010281_01 euxassay_010281_02 euxassay_010281_03 euxassay_010281_04
EMAGE:15128 EMAGE:15128 EMAGE:15128 EMAGE:15128 EMAGE:15128
euxassay_010281_05 euxassay_010281_06 euxassay_010281_07 euxassay_010281_08 euxassay_010281_09
EMAGE:15128 EMAGE:15128 EMAGE:15128 EMAGE:15128 EMAGE:15128
euxassay_010281_10 euxassay_010281_11 euxassay_010281_12 euxassay_010281_13 euxassay_010281_14
EMAGE:15128 EMAGE:15128 EMAGE:15128 EMAGE:15128 EMAGE:15128
euxassay_010281_15 euxassay_010281_16 euxassay_010281_17 euxassay_010281_18 euxassay_010281_19
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euxassay_010281_20 euxassay_010281_21 euxassay_010281_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15128Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15128_wholemount_strong.wlz
15128_wholemount_moderate.wlz
15128_wholemount_weak.wlz
15128_wholemount_possible.wlz
15128_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15128_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T37231
Entity Detected:Zzef1, zinc finger, ZZ-type with EF hand domain 1 ( MGI:2444286)
Sequence:sense strand is shown

>T37231
GTGTGGAAGTGACAGAAATGGAGGGGCTCTCCAGCACCTGCAGTGCAGGCAGTGCCCTCAGAGGAGCCTT
TGTTCAGGAGTCAGGACACACCTGATTATACTTCTGCTCCAAGGTCATGGTGATCAGCAGCCTACGACCT
TGAACCTCCTGCCTGGTTGTTTGGCCATCCCCTGCCTAGCAATAACTACGTTAGTTTTAGTGAAGCTTTT
GCGTATTTCCTTCTATGGTTTTAGCATTGCCCTGTGTGCTGATGACCTTTTTCCCCAGAGCCACAGAGTA
GGATGCTGGGTCAGCAGCAGGCCGTGGACTTTCAGGAAGAATCCTGAGGCACCTGCTGTTGAAGGGCAGG
CATCTGGCCAGAGGCATATCCCACCTCACAGGCAGAATGCAAATAAAAAAAAAAAAAAAAAAGGCTCCTA
AGAGCCAGGGCCACATTTGGCTGGCTTTTGCTGTGACCAAGCTTGCCCCTTTGGCCTCTGAAGACTCTTC
TGGGAGTTGGCAAAGGACTGCATTGGCAGAACCTGAACCTGCAGGTGTGGGAGCATCTTGTGCAAAGGTG
CTATGCCTTCTGGC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 87521. Forward Primer - name:087521_F_cDNA_Zzef1, sequence:GTGTGGAAGTGACAGAAATGGA; Reverse Primer - name:087521_N_SP6_cDNA_Zzef1, sequence:GCCAGAAGGCATAGCACCTTT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15129 same embryo
 EMAGE:15131 same embryo
 EMAGE:15126 same embryo
 EMAGE:15130 same embryo
 EMAGE:15127 same embryo
 EurExpress:euxassay_010281 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS