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EMAGE:15310

Cdadc1 cytidine and dCMP deaminase domain containing 1 ( MGI:1919141)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310
"Pseudo-wholemount" of euxassay_010523. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010523_01 euxassay_010523_02 euxassay_010523_03 euxassay_010523_04
EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310
euxassay_010523_05 euxassay_010523_06 euxassay_010523_07 euxassay_010523_08 euxassay_010523_09
EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310
euxassay_010523_10 euxassay_010523_11 euxassay_010523_12 euxassay_010523_13 euxassay_010523_14
EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310
euxassay_010523_15 euxassay_010523_16 euxassay_010523_17 euxassay_010523_18 euxassay_010523_19
EMAGE:15310 EMAGE:15310 EMAGE:15310 EMAGE:15310
euxassay_010523_20 euxassay_010523_21 euxassay_010523_22 euxassay_010523_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15310Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15310_wholemount_strong.wlz
15310_wholemount_moderate.wlz
15310_wholemount_weak.wlz
15310_wholemount_possible.wlz
15310_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15310_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30812
Entity Detected:Cdadc1, cytidine and dCMP deaminase domain containing 1 ( MGI:1919141)
Sequence:sense strand is shown

>T30812
TGAAGAGGAAAGCCGTGGTCCCTTAGGAGACAATGAAGAGTTGACCAGAGTGTCTACTGAAAAAAAACAG
GTGAAGAAAACTGGTCTTGTGGTGGTGAAAAACATGAAGATCATTGGTCTTCACTGCTCCAGTGAAGACT
TACATACTGGGCAAATTGCTCTCATTAAGCATGGGTCCAGGCTGAAAAACTGTGATCTTTATTTTTCAAG
AAAACCATGTTCTGCTTGTTTGAAAATGATAGTGAATGCTGGAGTTAACCGAATTTCTTACTGGCCTTCT
GACCCAGAAATAAGTTTGCTCACTGAAGCTTCTAGTTCTGAAGATGCAAAGCTAGATGCCAAAGCCGCAG
AAAGATTGAAGTCAAACAGCCGGGCCCATGTGTGTGTCTTACTCCAGCCGTTGGTGTGTTACATGGTGCA
GTTTGTGGAGGAAACCTCTTACAAATGTGACTTTATTCAGAAAACTGCAAAAGCGTTGCCGGGTGCTGAC
ACTGATTTTTATTCTGAATGTAAACAAGAAAGAATAAAAGAGTATGAAATGTTATTTTTGGTTTCAAATG
AAGAAAGGCATAAGCAGATACTGATGACTATAGGTCTGGAGAGCCTGTGTGAAGACCCCTATTTTAGCAA
TCTAAGGCAAAACATGAAAGACCTGATTCTACTTTTGGCCACAGTAGCTTCTAGTGTGCCCAACTTGAAA
CACTTCGGATTCTACTGTAGCAGCCCAGAGCAGATTAATGAAATTCACAATCAGAGTTTGCCACAGGAAG
TTGCAAGGCATTGCATGGTGCAGGCCAGGTTATTGGCATATCGAACTGAGGATCATAAAACAGGAGTTGG
AGCTGTCATTTGGGCAGAAGCGAAATCTAGAAGCTGCGATGGGACTGGAGCCAT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:3600168), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 16280. Forward Primer - name:016280_F_IRAV16-19_M05_Cdadc1, sequence:TGAAGAGGAAAGCCGTGG; Reverse Primer - name:016280_R_SP6_IRAV16-19_M05_Cdadc1, sequence:CATGGCTCCAGTCCCATC. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15305 same embryo
 EMAGE:15309 same embryo
 EMAGE:15307 same embryo
 EMAGE:15308 same embryo
 EMAGE:15306 same embryo
 EurExpress:euxassay_010523 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS