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EMAGE:15396

Ttll3 tubulin tyrosine ligase-like family, member 3 ( MGI:2141418)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15396 EMAGE:15396 EMAGE:15396 EMAGE:15396 EMAGE:15396
"Pseudo-wholemount" of euxassay_010602. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010602_01 euxassay_010602_02 euxassay_010602_03 euxassay_010602_04
EMAGE:15396 EMAGE:15396 EMAGE:15396 EMAGE:15396 EMAGE:15396
euxassay_010602_05 euxassay_010602_06 euxassay_010602_07 euxassay_010602_08 euxassay_010602_09
EMAGE:15396 EMAGE:15396 EMAGE:15396 EMAGE:15396 EMAGE:15396
euxassay_010602_10 euxassay_010602_11 euxassay_010602_12 euxassay_010602_13 euxassay_010602_14
EMAGE:15396 EMAGE:15396 EMAGE:15396 EMAGE:15396 EMAGE:15396
euxassay_010602_15 euxassay_010602_16 euxassay_010602_17 euxassay_010602_18 euxassay_010602_19
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euxassay_010602_20 euxassay_010602_21 euxassay_010602_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15396Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15396_wholemount_strong.wlz
15396_wholemount_moderate.wlz
15396_wholemount_weak.wlz
15396_wholemount_possible.wlz
15396_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15396_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Text Annotation:
StructureLevelPatternNotes
pons ventricular layer
weak weak
regionalweak expression: see section 10
midbrain ventricular layer
weak weak
regionalweak expression: see section 10
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T30802
Entity Detected:Ttll3, tubulin tyrosine ligase-like family, member 3 ( MGI:2141418)
Sequence:sense strand is shown

>T30802
GCCCACTTGCAGGAGGTAGATGCCCCAAAGGCCTGGTCCAGCGTCATCGTGCCAGGCATGAAGGCTGCTG
TGATCCACGCCCTGCAGACCTCCCAAGACAACGTGCAGTGCCGGAAGGCCAGCTTTGAGCTCTATGGGGC
AGACTTTGTGTTTGGGGAAGACTTCCAGCCCTGGTTGATTGAAATCAATGCCAGCCCCACCATGGCACCT
TCCACGGCTGTCACTGCCCGCCTCTGTGCCGGTGTGCAGGCAGATACCCTGCGTGTGGTCATCGACCGGC
GCCTGGACCGCAGCTGTGATACGGGAGCCTTTGAGCTCATCTATAAGCAGGTAAGATGCTCCAGCACCTC
CCACAAGCAGCCTCACGGTCCTGGGATCTGGTGTGAGACATAGCTCAAGACCTGGGTTTCTATCCTGACC
CCCACAGGTGTCTTAAAACAGACACTTCCTCTGGTCTGACTCATCTGTGAACTGGAGGTTACAGTCAGGT
CTGAGGGTCATTAATGCTGAGTCCATATTCATAGATATTTTCAGAGGCTTTGCGACCTCCTCAGCCTCCA
ATTGCAATTCCAAGCCTCTAGGTAGCCTCATTTCCTGTATAGTAAGACTGCAACTGGCTCCTCCTTAGTG
TGCTGTGAGAACAGAGTGGTTTGATCTGCCTCGGGGCTTTGCTGGGGAACCTAGACAGAAGACAGGAAGG
ACAGCTTCAACTCCTACTGTGCCTGCCCAGTAAGGCTG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from the plasmid IMAGE:3597662), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 38498. Forward Primer - name:038498_F_IRAV16-19_I13_4833441J24Rik, sequence:GCCCACTTGCAGGAGGTA; Reverse Primer - name:038498_R_SP6_IRAV16-19_I13_4833441J24Rik, sequence:TCAGCCTTACTGGGCAGG. The reverse primer contains a 5' extension containing an SP6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using SP6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15394 same embryo
 EMAGE:15399 same embryo
 EMAGE:15397 same embryo
 EMAGE:15398 same embryo
 EMAGE:15395 same embryo
 EurExpress:euxassay_010602 same experiment
 MGI:4828999 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS