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EMAGE:15562

Mex3d mex3 homolog D (C. elegans) ( MGI:2681847)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562
"Pseudo-wholemount" of euxassay_010733. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_010733_01 euxassay_010733_02 euxassay_010733_03 euxassay_010733_04
EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562
euxassay_010733_05 euxassay_010733_06 euxassay_010733_07 euxassay_010733_08 euxassay_010733_09
EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562
euxassay_010733_10 euxassay_010733_11 euxassay_010733_12 euxassay_010733_13 euxassay_010733_14
EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562
euxassay_010733_15 euxassay_010733_16 euxassay_010733_17 euxassay_010733_18 euxassay_010733_19
EMAGE:15562 EMAGE:15562 EMAGE:15562 EMAGE:15562
euxassay_010733_20 euxassay_010733_21 euxassay_010733_22 euxassay_010733_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15562Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15562_wholemount_strong.wlz
15562_wholemount_moderate.wlz
15562_wholemount_weak.wlz
15562_wholemount_possible.wlz
15562_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15562_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T38317
Entity Detected:Mex3d, mex3 homolog D (C. elegans) ( MGI:2681847)
Sequence:sense strand is shown

>T38317
GACTTTGGTTTTGACTTCCTGGCGCTAGACCTGACCGTGCCTGCCACGGCTACCATTTGGGCGCCCTTCG
AGAGAGCCGCGCCCCTGCCAGCCTTCAGCGGCTGCCCCGCAGTTAATGGGGCACCCGCGCAACCCAACAC
AGGCACACGGCGCAGTAGCGGCGGCGGGGCCGCCACCACGCCGCGCCACTCACCCACGCTGCCGGAGCCG
GGAGGACTGAGCCTGGAGCTGCCGCTGGCGCGTCGAAGCGTCCCAGATCCAGTGGGTGCTGTGCCTTGGC
GACCCCCGCAGAGCGCGCTGCCGCCTTTCTCTGGCAGTACCACCTTCTCCACAACCCCCTCTCTGCCCAG
TACAACCCTGGCGTCCTCCACCCTAGACACTGTCCCCTCGGAAGGCAACCACAAGCCATCTACCACAGCA
GCGAACTCCTCTGCGTCTACCGCAGCCCCTGGCCCACCCTCGGCAGCCTTGGCTCGAGAGTGTGTGGTGT
GTTCTGAAGGTGAGGCCATGGCTGCGTTGGTCCCCTGTGGCCACAACCTCTTCTGCATGGATTGTGCTGT
CCGCATCTGCGGGAAGAGTGAACCAGAATGTCCCGCCTGCCGCACGCCAGCCACCCAAGCCATTCATATC
TTTTCCTAGTGTACCCCTACTTGATGGGGT
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 146651. Forward Primer - name:146651_F_cDNA_Rkhd1, sequence:GACTTTGGTTTTGACTTCCTGG; Reverse Primer - name:146651_N_SP6_cDNA_Rkhd1, sequence:ACCCCATCAAGTAGGGGTACA. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15560 same embryo
 EMAGE:15559 same embryo
 EMAGE:15558 same embryo
 EMAGE:15561 same embryo
 EMAGE:15563 same embryo
 EurExpress:euxassay_010733 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS