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EMAGE:15964

1810020O05Rik Riken cDNA 1810020O05 gene ( MGI:3586838)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:15964 EMAGE:15964 EMAGE:15964 EMAGE:15964 EMAGE:15964
"Pseudo-wholemount" of euxassay_013397. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_013397_01 euxassay_013397_02 euxassay_013397_03 euxassay_013397_04
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euxassay_013397_05 euxassay_013397_06 euxassay_013397_07 euxassay_013397_08 euxassay_013397_09
EMAGE:15964 EMAGE:15964 EMAGE:15964 EMAGE:15964 EMAGE:15964
euxassay_013397_10 euxassay_013397_11 euxassay_013397_12 euxassay_013397_13 euxassay_013397_14
EMAGE:15964 EMAGE:15964 EMAGE:15964 EMAGE:15964 EMAGE:15964
euxassay_013397_15 euxassay_013397_16 euxassay_013397_17 euxassay_013397_18 euxassay_013397_19
EMAGE:15964
euxassay_013397_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:15964Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
15964_wholemount_strong.wlz
15964_wholemount_moderate.wlz
15964_wholemount_weak.wlz
15964_wholemount_possible.wlz
15964_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:15964_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T40030
Entity Detected:1810020O05Rik, Riken cDNA 1810020O05 gene ( MGI:3586838)
Sequence:sense strand is shown

>T40030
CTCAATTCCCAAAGGCAACTACCTGGAGGCCAACTCTTTACTCAAGCTCCGAGTGGACATTGCAGTGCCC
CTGAGTGGTTGGTCCAGAGCTCCCCAGTTGGACCTAATGGGTACCCATTTTGGCCGCATCATTTTTGTGT
TCCACGCCAAGAAACTGTCCCTCCTACAGAGCCTGCTGCAGGACATCACTATGATCAATGCTAAAGCCCT
GGAACTGGACTGTTATCCCCTCCAGAACATCCAGCAAATCCTGTCGGCCTTCAAGGTGCGCGTGAAGATC
CAAGAGCAGCAGGACCTGGATGTGCTCACGGGCTTCCATCTGCTGGATGGAAAGATCCATCTTTTTATTC
TAGAAGGCTTGGCAGACCGTGGATTGAGGCAGCTGTGGGAGAGTTACCAGAGCAGTGTTACTGCCTCCAA
CCGTGCAGCTTGCAAGGTGCTCTATGACTCCAGGTTGCTCTTCTGCCACCGCCTGTACGCTGACCTGGAG
ACCATCCTGTACCATGTACATTTGTTCAGGCCTGTGTCAGTGCTCCTGCGGTACCCTGCACTCTATGTTC
GTGGGGCTGTGTCACGTATGGCCTTTAAGGCACTGTCCAGTGGGGTTGTTTATACAGGTGACGCTGAGTG
GCTGGCCGTTCGTCATTTCAGGATCCATGACATCTGCCAAAGTAGTACCAGGCTCAAGGAGGTGGTTATG
AGAGATCTGCTGCCTTCCTCCTCCATGATTAAAGAACTGAGCCAAGAGTTTGGGATCCCCATTTCTCAGG
AAGATCTCACAG
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 108112. Forward Primer - name:108112_F_cDNA_LOC434061, sequence:CTCAATTCCCAAAGGCAACTAC; Reverse Primer - name:108112_N_SP6_cDNA_LOC434061, sequence:CTGTGAGATCTTCCTGAGAAATG. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:15963 same embryo
 EMAGE:15962 same embryo
 EMAGE:15961 same embryo
 EMAGE:15960 same embryo
 EMAGE:15959 same embryo
 EurExpress:euxassay_013397 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS