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EMAGE:16435

Mir338 microRNA 338 ( MGI:3619352)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:16435 EMAGE:16435 EMAGE:16435 EMAGE:16435 EMAGE:16435
"Pseudo-wholemount" of euxassay_019123. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_019123_01 euxassay_019123_02 euxassay_019123_03 euxassay_019123_04
EMAGE:16435 EMAGE:16435 EMAGE:16435 EMAGE:16435 EMAGE:16435
euxassay_019123_05 euxassay_019123_06 euxassay_019123_07 euxassay_019123_08 euxassay_019123_09
EMAGE:16435 EMAGE:16435 EMAGE:16435 EMAGE:16435 EMAGE:16435
euxassay_019123_10 euxassay_019123_11 euxassay_019123_12 euxassay_019123_13 euxassay_019123_14
EMAGE:16435 EMAGE:16435 EMAGE:16435 EMAGE:16435 EMAGE:16435
euxassay_019123_15 euxassay_019123_16 euxassay_019123_17 euxassay_019123_18 euxassay_019123_19
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euxassay_019123_20 euxassay_019123_21 euxassay_019123_22 euxassay_019123_23 euxassay_019123_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:16435Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
16435_wholemount_strong.wlz
16435_wholemount_moderate.wlz
16435_wholemount_weak.wlz
16435_wholemount_possible.wlz
16435_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:16435_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T70416
Entity Detected:Mir338, microRNA 338 ( MGI:3619352)
Sequence:sense strand is shown

>T70416
AACAATATCCTGGTGCTGAGTG
Notes:The probe used by the EURExpress consortium to detect the presence of miRNA mmu-miR-338-5p was custom designed and ordered from Sigma-Exiqon by the EURExpress partner in Geneva and then distributed to the ISH generating units within the consortium.
Chemistry:LNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:16438 same embryo
 EMAGE:16434 same embryo
 EMAGE:16436 same embryo
 EMAGE:16437 same embryo
 EMAGE:16433 same embryo
 EurExpress:euxassay_019123 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS