Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:17134

Acsm5 acyl-CoA synthetase medium-chain family member 5 ( MGI:2444086)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17134
euxassay_001522_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17134Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17134_wholemount_strong.wlz
17134_wholemount_moderate.wlz
17134_wholemount_weak.wlz
17134_wholemount_possible.wlz
17134_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17134_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: three stars
Text Annotation:
StructureLevelPatternNotes
axial skeleton
weak weak
regionalweak expression: see section 01
basisphenoid bone
weak weak
regionalweak expression: see section 01
pectoral girdle and thoracic body wall skeleton
weak weak
regionalweak expression: see section 01
Annotation Validation: spatial mapping by EMAGE editor, text annotation by author
Detection Reagent
Type:in situ hybridisation probe
Identifier:T4520
Entity Detected:Acsm5, acyl-CoA synthetase medium-chain family member 5 ( MGI:2444086)
Sequence:sense strand is shown

>T4520
TGAAGCTGCTGACTTCTAACCCTGTTTTCTCCAGGCTGTGCTTGGGGCTAAAGCTCCCTGTCCCAATCCT
GCCTTCATCGCTTCTGGGGAAATCTTCTCAGGAGCTTTTAGGTCTGCCTTGCTGCTGCAGTGAAACGCAG
ATGCCTTTTGTGTACCTCAGATTTTAAAACAAGGCAGAAGTTGATAGAAGTCATGAGGTTGTGGCTAAGA
GGCCTGGCCTGCCAGGCTCTGAGGAGTTCCTGGGGAGTCTGCAGGATTCACACACAGCCACCACCTCCCC
CGATCCCTGAGGTGGTAGCTACCTGGGAAGCCATCAGCCTGGGGAGGCAGCCAGTGCCCGAGTACTTCAA
CTTTGCTCATGATGTGTTGGATGTGTGGAGTCAGCTGGAAAAGACAGGGCACCGGCCCCCAAATCCTGCA
TTCTGGTGGGTGAACGGCTCAGGAACAGAAGTCAAGTGGACATTTGAGGAGCTGGGGAAGCAGTCGAGGA
AGGCAGCCAATGTCTTAGAGGGTGTGTGTGGCCTGCAACCTGGAGACAGAATGATGCTGGTGCTTCCGAG
ACTCCCAGATTGGTGGCTGATCAGCGTGGCTTGTATGCGAACAGGTGTGGTCATGATCCCAGGAGTCTCC
CAGCTGACAGCGAAGGATCTCAAGTATCGGCTGCAGGCTGCCAGGGCCAAGTCTATCGTCACCAGTGATG
CCCTAGCTCCGCAAGTGGATGCCATCAGTGCTGACTGTCCCTCCCTCCAAACCAAGCTTCTGGTGTCTGA
CACCAGCCGTCCAGGCTGGATCAATTTCCGAGAACTCCTGAGAGCGGCTTCTCCAGAGCACAACTGTGTG
AGAACCAGAAGTGGAGATTCAGTGGCCATCTACTTCACCAGTGGAACCACAGGGGCCCCCAAGATGGTGG
AACATTCCCAGTCCAGCTATGGATTGGGTTTTGTGGCCAGTGGAAGGAGGTGGATGGCCTTGACTGAGTC
TGACATATTCTGGAACACAACTGACACTGGATGGGTGAAAGCAGCCTGGACCCTCTTCTCTGCCTGGTCC
AATGGAGCTTGCATTTTTGTGCATGAGCTGCCCCGAGTTGATGCCAAAACTATTCTAAATACTCTCTGCA
GGTTCCCAATAACCACCCTGTGCTGTGTCCCAACCCTCTTCCGGCTGCTTGTACAAGAGGATCTGACAAG
GTACAAGTTCCAATGTCTGAGGCACTGTTTGACGGGTGGAGAGGCCCTCAACCCTGATGTGAGGGACAAG
TGGAAGAGCCAGACAGGCCTGGAGCTCCATGAAGGCTATGGACAATCAGAAACAGTTGTCATCTGTGGCA
ATTCAAGAAACTCGACAATCAAGTCTGGATCTATGGGGAAAGCAAGCCCACCTTACGATGTGCAGATTGT
AGATGAGGAGGGCAATGTCCTGCCTCCAGGAAAAGAGGGAAATATTGCTGTCCGAATCAAGCCTACTAGA
CCCTTCTGTTTCTTCAACTGCTATCTGGACAATCCCGAGAAGACAGCAGCATCAGAGCAAGGAGACTTTT
ACATCACTGGGGACAGAGCACATATGGACGAGGATGGCTACTTTTGGTTCTTGGGGAGAAATGATGATGT
AATCAACTCTTCAAGCTACCGGATTGGTCCTGTTGAAGTAGAGAGTGCACTTGCTGAGCATCCAGCTGTC
CTGGAGTCTGCTGTGGTCAGCAGCCCAGACCCCATCCGGGGAGAGGTGGTAAAGGCATTTATAGTCCTTT
CTCCAGCCTATGCATCTCATGACCCAGAAGCCCTGACCAGGGAACTCCAGGAGCATGTGAAGACAGTGAC
TGCTCCATACAAGTACCCCAGGAAGGTGGCTTTTATTTCAGAACTGCCAAAGACGGTTTCTGGAAAGATC
CTAAGGAGTAAATTGAGAAACCAAGAGTGGGGGAGATGAAATGCAACCCAAGAGAGATGCTGCGATGCAC
TGAAGGTTCTGAAGGAGAAGGAAGTGGGGCAGGCCAGCTCCTCCTTGGAGTACTATCCCTTCAAAGAATA
GATATCAAAGATGGTCAGCTTTCAAATGGGCATTTTGGGATAATGCTGGAAAATGTAAGAGCATCCCTGG
TCCAGAGCTCACATACACTGCCCAGTCCAGCAAATGCCCTACAGCTTAATTTCCCTCTCTGAAGACATCC
TCAGCATTGCTTTTACCAAGAGAACTCTGTTTTCCTGGGACAGACAAATCGGCACAGCCTTAGGGCATCC
TTGGTCTCATTATGCCAGTGGGAATGAATGTGACCCTTTGGATGAAGTCATTTGGCAACAGCATCTGGGA
CATAACATTGACTGTCATACCCTTCCATTTAGACACACTTTTGGGACTCACTATAAAGAAAAGATTCGAA
ATGCAGAAAACATTTGATATACAAAGATATTCAGTGAGATAGTGCTTAAAACTGAAAACACACACAACTG
CCAAAGCAATAGAGAAATAATTAAATCAATCAACAATGTAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4971395 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4971395 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17136 same embryo
 EMAGE:17132 same embryo
 EMAGE:17133 same embryo
 EMAGE:17135 same embryo
 EurExpress:euxassay_001522 same experiment
 MGI:4822952 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS