Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:17315

Nup35 nucleoporin 35 ( MGI:1916732)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17315 EMAGE:17315 EMAGE:17315 EMAGE:17315 EMAGE:17315
"Pseudo-wholemount" of euxassay_003908. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003908_01 euxassay_003908_02 euxassay_003908_03 euxassay_003908_04
EMAGE:17315 EMAGE:17315 EMAGE:17315 EMAGE:17315 EMAGE:17315
euxassay_003908_05 euxassay_003908_06 euxassay_003908_07 euxassay_003908_08 euxassay_003908_09
EMAGE:17315 EMAGE:17315 EMAGE:17315 EMAGE:17315 EMAGE:17315
euxassay_003908_10 euxassay_003908_11 euxassay_003908_12 euxassay_003908_13 euxassay_003908_14
EMAGE:17315 EMAGE:17315 EMAGE:17315 EMAGE:17315 EMAGE:17315
euxassay_003908_15 euxassay_003908_16 euxassay_003908_17 euxassay_003908_18 euxassay_003908_19
EMAGE:17315 EMAGE:17315 EMAGE:17315
euxassay_003908_20 euxassay_003908_21 euxassay_003908_22

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17315Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17315_wholemount_strong.wlz
17315_wholemount_moderate.wlz
17315_wholemount_weak.wlz
17315_wholemount_possible.wlz
17315_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17315_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T5712
Entity Detected:Nup35, nucleoporin 35 ( MGI:1916732)
Sequence:sense strand is shown

>T5712
GGGAAGCTCATTGCTGGAGTAGGAGCGGCCGTTGCGATGGCAGCGTTTGCGGTGGATCCCCAGGCGCCCA
CGTTGGGATCTGAACCAATGATGTTGGGTTCACCTACATCTCCAAAGACAGGCGCTAATGCCCAGTTCTT
GCCTGGATTTTTAATGGGGGATCTACCAGCTCCAGTGACTCCGCAACCTCGATCAATTAGTGGCCCTTCA
GTAGGAGTAATGGAAATGAGATCACCTTTACTAGCAGGGGGCTCCCCACCACAGCCAGTTGTCCCTGCTC
ATAAAGATAAGAGTGGAGCTCCACCTGTGAGAAGTATCTATGATGACATTTCCAGCCCAGGACTTGGATC
AACGCCTTTGACTTCAAGAAGACAGGCAAACATTTCATTGTTGCAGAGTCCTCTTGTTGGAGCTACAACT
CCTGTGCCTGGGCAAAGCATGTTTAGTCCAGCAAACATTGGTCAACCACGAAAGACAACACTATCTCCTG
CCCAACTGGATCCTTTTTATACTCAAGGAGATTCTCTGACTTCAGAAGATCACCTAGATGACACTTGGGT
GACTGTGTTTGGGTTTCCACAGGCATCTGCTTCTTATATATTATTACAGTTTGCACAATATGGGAATATC
TTAAAGCATGTGATGTCTAACACAGGCAACTGGATGCATATTCGTTACCAATCTAAATTGCAAGCCCGGA
AAGCCTTAAGCAAAGACGGGAGAATATTTGGAGAATCCATCATGATTGGTGTCAAGCCATGTATAGATAA
AAATGTCATGGAAAACAGTGACAGAGGAGTCTTGTCATCTCCATCTCTAGCCTTTACAACACCCATCAGG
ACTTTAGGCACTCCAACACAGTCCGGAAGCACTCCTAGGGTTTCTACCATGAGGCCTCTTGCCACAGCAT
ACAAGGCCTCCACTAGTGACTACCAGGTTATTTCTGACAGACAGACACCAAAGAAGGATGAGAGCCTTGT
GTCAAGAGCGATGGAGTACATGTTCGGTTGGTAGTACAGCAGGAACTGGACTGAGCCGCTATGCTACAGT
AGCAGAGGGCTGCCATGCCATGGGTTAGTTGTATAACCATCCTGGCAGTGTGGGATACCCATCTCGGATA
CATCTTTTACAATCCTTTGGTTAAGGAAACAGCCCATCTGTAGCTTGCACTTTAAAAGATGGCCGTGATA
GACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCTGTGATGTAGTGCATGCTTAGTGCCGGGTACC
CGGCGACTACTGCCGTCAATTAAATGATTGAGCTTCAAGTGAGTCTCACTGGCTTTCATGAGAAGGCGGA
TGAATCTCAGAGAGTGAGAGCTGCTTTACCAAGACACAGTGATTATAATTAGCAATTTGAATTATGGTCT
TAATTTAGATAGTATTTAATATCTTTGTATATGTCTTGTGGATTGTCATCTCTTATATTCTTTTTAAAAA
CCATCTACAACTAATGTTTCCAAATAAACTTTGTCAATTTTTATGTGCTAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:2647417 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:2647417 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17314 same embryo
 EMAGE:17316 same embryo
 EMAGE:17313 same embryo
 EurExpress:euxassay_003908 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS