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EMAGE:17418

Ndor1 NADPH dependent diflavin oxidoreductase 1 ( MGI:1926047)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17418
euxassay_003855_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17418Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17418_wholemount_strong.wlz
17418_wholemount_moderate.wlz
17418_wholemount_weak.wlz
17418_wholemount_possible.wlz
17418_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17418_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7806
Entity Detected:Ndor1, NADPH dependent diflavin oxidoreductase 1 ( MGI:1926047)
Sequence:sense strand is shown

>T7806
GTGCGGTTCTGGCCGGCGTGTGCAGTAATGCAGGTTCCACAGCTCCTGGTGCTTTTCGGCAGCCAGACTG
GTACAGCCCAGGACGAGGCGGAGAGGCTGGGCCGTGAGGCCCGGCGCCGGCGGCTAGGTTGCCGCGTGCA
GGCTTTGGACTCTTACTCCGTGGTGAAGGTGGTGGTGGGATGCGGTGCAGGGAGGGCACTGATCAAGGCT
GCCAGAGACCTTACATCTACTTGTGTCTTGTCCTCGAGGCGAATCTCATTAGGGAGCCCCTGGTGATATT
TGTTTGTGCGACCACAGGCCAAGGAGACCCTCCTGACAACATGAAGAACTTCTGGAGGTTCATATTCCGG
AAGAGCCTGCCGTCCAGCTCCCTCTGTCAAATGGATTTTGCTGTCCTAGGCCTCGGGGATTCCTCATATG
CCAAGTTCAACTTTGTGGCCAAGAAGCTACATCGTAGGCTGCTGCAGCTAGGAGGCAGTGCGCTTCTGCC
CCCATGTCTGGGTGATGACCAGCATGAGCTGGGGCCTGATGCTGCCATTGACCCCTGGGTAGGAGATCTT
TGGGAGAAGATAATGGTTATGTACCCAGTACCCCTTGACATTCCTGAGATTCCTCATGGAGTCCCCTTGC
CCTCCAAGTTCATCTTTCAGTTTCTTCAGGAGGTCCCCAGCATAGGGGCTGAGGAGCTCAACATAGCCAG
CTCAGCCCCTCAGACACCCCCATCAGAGTTACAGCCCTTCCTGGCACCTGTGATCACCAACCAGAGGGTC
ACTGGCCCCCAACACTTTCAGGATGTTCGGCTGATTGAATTTGACATTACAGACTCCAATATCAGCTTTG
CTGCTGGTGATGTTGTATTCATTTTGCCCTCTAACTCGGAGGCCCACACCCAGCAGTTCTGCCAAGTGTT
GTGCCTGGACCCCAATCAGTTTTTCACACTTAAGCCACGGGAACCAGGTGTCCCTGACCCACCAGGGCTG
CCTCAGCCCTGTACTGTGTGGAACCTCGTGTCCCAGTACTTGGACATTGCCAGTGTGCCCCGCCGTTCCT
TCTTTGAGCTCCTGGCTTGTCTCTCCCAACATGCGCTGGAGCGAGAGAAGCTGCTGGAATTGAGCTCTGC
CAGAGGTCAGGAAGAGCTCTGGGAGTACTGCAGTCGGCCCCGCAGAACCATCTTGGAGGTGCTATGCGAC
TTTCCACATACAGCGGGTGCCATTCCTCCAGACTACCTTTTGGACCTAATCCCTCGGATCCGCCCACGGG
CCTTCTCCATTGCTTCCTCCCTACTGGCTCATCCCAGGAGGCTACAGATCCTTGTGGCTGTGGTAAAGTA
CCAGACTCGTCTGAAGGAGCCCCGCCATGGTCTCTGCTCCTCCTGGCTAGCATCCCTGAATCCTGGGCAA
GCAGGACCTGTCCGGGTGCCTCTGTGGGTACGTCCTGGGAGCCTCGTGTTCCCAAAAACACCAGACACAC
CCATTATCATGGTGGGGGCTGGAACTGGTGTGGCCCCCTTCCGAGCAGCCATTCAGGAACGAGTGGCTCA
TGGCCAAACTGGTGAGTACTGGAGCTCCAAAGCAGTGTGACCTGACCACTGAGCCTGGTCTAGCTGAATT
TCTGCATCCAGACGGGGACCGCCCTATGTACCCCAGGAAACTTCTTGTTCTTTGGCTGCCGCCAGCGGGA
TCAGGACTTCTACTGGCAGACTGAATGGCAGAAGCTAGAGCAGAAGGGCTGGCTGACCCTGGTTACAGCC
TTCTCCCGGGAGCAGGTGAGTATATTCAAGTTAGATAGGACAGGAGTTGGGATGGCTGAAACTTAGCCTC
TGACACCTGCAGGAGCAGAAGGTATATGTGCAGCACCGGCTTCGAGAGCTGGGGCCACTTGTCTGGGAGC
TGCTGGATGGCCAAGGTGCCTACTTCTACCTAGCAGGCAATGCTAAATATTTGCCTACGGATGTTTCGGA
AGCCCTTATGTCCATTTTTCAAGAAGAAGGACGACTCTCCACTGCAGATGCATCTGCCTACCTTGCTAGG
CTCCAGCAGACACTGCGCTTCCAGACTGAAACCTGGGCCTGAGGAGCCACTTGCTAGCTCACACTCACAT
TAACAGCTGCATTGGGTAGCCTGCTGGAGTCTAGAAGGCCCATTGTTACCTCTTGCCTTCTAATCCCAGA
ACACTGGGTAGACCCACAGTTTCGCTTTTTTGGTCCAGCTGACCAGGAGGGCAGTCCTTGCGTACAGCCA
AACTCAGTGGAACCCAGTGTCCCATACGTAGGCCCAGCCCCGGTGCAGCTAGAACTCCTGGTTTTCTCTC
AGACCCCTTCATTCTGCCCCAAATCTGCATTTATAGTCCCTTAGAGCACCGCTACCAGCTGCGCTTCCTG
GCAGCCTAGGCACCTGGTTGTGGGCACTACGGGAACGTGGCCCCTGTGCCCGCCGCTTGTCACTGCTGAG
CCTACTGGTCCTTGAACTGCTCGGGCTGGTGGTCATCTTCATGCCGCTCCTTTTACTAGGGGTGCTCTTC
ATGCTGCTAGACCGTTCCACCCACTAAGCAGAGCCCAGAATGCTGGCCAAGCTTTGAAGTCCATGCACGC
TTGGATTCTGGTAATCAGCAAAGACTTGTTATCACCAATACCAAGACTATACATGCCTAAGAGCCTACGC
CAGCCAGAGTGCTTACACACCCTTGCAGCCTAGATATTAGCTAAAGCCAAGGACACAAGGACAGCCTCTG
AAGGAGCTTGGCCTGGCAGAAAGAGTTGTGAAAAGAACCCTATGTGCTTGCCATGGGCGGTCATCTCACT
GGCCACAGGCAGAAGCTGGGCTATACCGCCAGCTCGTAGTCCAGCTGGTGAGAGTGGACACAAATGTGTG
ATTCCAACAGTGATTCTGTTTATCCTGAGATCTGTTCATTGGAGAAGGCAAGGGCTGCAGACTCTCACCT
GCACCAGACAGAAGCTGGTGTGTGTCCTGAAGGCAACAGCAGCAGCCACAGTAACTACCAGGAGAGGCCT
GCACTGCACAAGCCAGCCTTCAAAAGCTCCCACCCAACCTAAGCTACTCTCACCAGAGAAGGTAGCCCAG
AGGAGCTGGGATCAATATTGCCTTTGTTTTGCAAGGGCCCATCCAGACCCTGAAGCCTCCAAATGCCCAA
GGTCTAGCTCTGTTCCTAGTTGACTCTGCAATTCATGTCACTGGACCAGGAGCCCTCACTTGGGAGATGC
AGACAAATCTAAGCTCACTTCATGGCTCATTGGTGACACAATGTAAGGTGTAACATTTCAGGCTGAGTCC
TATATAACAAGCATAAGAAAGGCTCTCAGACCAGGCAGTGGTGGCGCACACCTTTGATCGCAGCACTTGG
GAGGCAGAGGCAGGTGGATTTCTGAGTTCCAGGCCAGCCTGGTCTACAGAGCGAGTTCCAGGAGGACAGC
CAGGGCTACACAGAGACACCCTGTCTCCCAAAAAAAAAAAAAAGTTCTCAATAAACAGTTGTTACTGATT
CTAAAAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:6331033 using vector (pCMV-SPORT6.1) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:6331033 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17421 same embryo
 EMAGE:17420 same embryo
 EMAGE:17419 same embryo
 EurExpress:euxassay_003855 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS