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EMAGE:17457

Tm2d2 TM2 domain containing 2 ( MGI:1916992)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:17457 EMAGE:17457 EMAGE:17457 EMAGE:17457 EMAGE:17457
"Pseudo-wholemount" of euxassay_003903. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_003903_01 euxassay_003903_02 euxassay_003903_03 euxassay_003903_04
EMAGE:17457 EMAGE:17457 EMAGE:17457 EMAGE:17457 EMAGE:17457
euxassay_003903_05 euxassay_003903_06 euxassay_003903_07 euxassay_003903_08 euxassay_003903_09
EMAGE:17457 EMAGE:17457 EMAGE:17457 EMAGE:17457 EMAGE:17457
euxassay_003903_10 euxassay_003903_11 euxassay_003903_12 euxassay_003903_13 euxassay_003903_14
EMAGE:17457 EMAGE:17457 EMAGE:17457 EMAGE:17457 EMAGE:17457
euxassay_003903_15 euxassay_003903_16 euxassay_003903_17 euxassay_003903_18 euxassay_003903_19
EMAGE:17457
euxassay_003903_20

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:17457Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
17457_wholemount_strong.wlz
17457_wholemount_moderate.wlz
17457_wholemount_weak.wlz
17457_wholemount_possible.wlz
17457_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:17457_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T7313
Entity Detected:Tm2d2, TM2 domain containing 2 ( MGI:1916992)
Sequence:sense strand is shown

>T7313
GAGGCCTGACAGCGCCGGGCTCCGGTGGGCCGTGGCGGCCTGGCTTTGTTTTTAGGCCAGGTCTCTAGGA
CCGGCCCCCGGGAAGATGGTGCTGGGCGGCTGCCCTGTGAGTTACCTATTGCTGTGCGGCCAGGCGGCCC
TGCTATTGGGGAACCTGCTGCTGCTGCACTGTGTTTCTCGGAGCCACTCGTTTAATGCTACGGCCGAACT
GGATCTCACACCCTCGGGCGCCGCTCACCTCGAGGGTCCCGCGGCCTCAAGCTGGGAATACAGCGACCCC
AACTCGCCAGTCATCCTTTGCTCTTACCTACCCGACGAGTTCGTAGACTGTGATGCCCCAGTGGATCACG
TTGGAAATGCAACTGCCTCCCAGGAGCTTGGTTATGGTTGTCTCAAGTTTGGGGGTCAGGCGTACAGTGA
TGTGCAACACACTGCAGTCCAGTGCAGAGCCCTGGAGGGAATTGAGTGTGCCAGCCCCAGGACCTTCCTA
CGAGAAAATAAGCCTTGTATAAAGTACACTGGACACTACTTCATAACCACGCTTCTCTACTCCTTCTTCC
TGGGATGCTTCGGAGTCGACCGCTTCTGCCTGGGCCACACTGGAACAGCAGTTGGAAAGCTGCTAACACT
TGGAGGACTGGGGATCTGGTGGTTCGTTGATCTTATTCTGCTCATCACTGGGGGGCTGATGCCTAGTGAT
GGCAGCAACTGGTGCACTGTCTACTAAGCCCTGCTGCTGTCCTGCGCCGGCAAGGAAAGCCAGTGCTTGC
CTGCCAAGATAATTACTACAAGCTCTGAACTCTCCTCTGAGCATCACCATCTTCTCTTGGAGGAAGGACC
GACCAAGTTTTTCACCCCAAATCTTAAGCTTGCAAACTAGAGTGACAAGCAGTATTGTGGAGTCCCGTCG
TACCCTTCCTCACATACACAATCTCAAAGAGCAAAGCTGGTGACTTCTCTCCAGAGACCATCGTCAGTGA
CGTTTCTGTGTGGCTGGCTCTTCAGCCGTTGGAGGCAGGGGGACCCACCAGGATAAACCAAGTGAGTGTT
TATCCACTCACAGCCTTTCGTGACCCTACATTTCCATGCACAGGTCAGAAGCTGCACCAATGAGAAGTCT
TCAGGCGATGTAGAAATGACTGTGGATTCTAATACACACCGAAATTCTGACTGAGAATTTAAATTGCAGA
ATAAAGTTTTAAAACCTAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:4188168 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:4188168 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:17461 same embryo
 EMAGE:17458 same embryo
 EMAGE:17460 same embryo
 EMAGE:17459 same embryo
 EurExpress:euxassay_003903 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS