EMAGE mouse gene expression spatial database

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EMAGE:17610

Txlna taxilin alpha ( MGI:105968)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005956. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005956_01	euxassay_005956_02	euxassay_005956_03	euxassay_005956_04

euxassay_005956_05	euxassay_005956_06	euxassay_005956_07	euxassay_005956_08	euxassay_005956_09

euxassay_005956_10	euxassay_005956_11	euxassay_005956_12	euxassay_005956_13	euxassay_005956_14

euxassay_005956_15	euxassay_005956_16	euxassay_005956_17	euxassay_005956_18	euxassay_005956_19

euxassay_005956_20	euxassay_005956_21	euxassay_005956_22	euxassay_005956_23

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17610_wholemount_strong.wlz

17610_wholemount_moderate.wlz

17610_wholemount_weak.wlz

17610_wholemount_possible.wlz

17610_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17610_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

strong

ubiquitous

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22 23

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9504
Entity Detected:	Txlna, taxilin alpha ( MGI:105968)
Sequence:	sense strand is shown >T9504 GGAGGCCTCTTCCTTCCCTCACTCACTCAGGGGCAGCTTCTCGGAAACCTTCCATGGGACCGTGAAATCC CGGGCGAAGACCGACCGGTCTGTTTGAAGCTTCGAGCGTCAGATTTGGGGATTTCTTATCTAGTTGTGAA GAAGAATTTTGAAGTCTAGAAAAAAAAAAGCAACTGGGTCCTTAAAGGATCTGCCCCATTTCTGGCCTTG CAGATCACAATGAAGAACCAAGACAAAAAGAATGGGCCTGCCAAACACTCCAACTCGAAGGGCAGCCCGG GGCAACGGGAAGCAGGACCGGAGGGAGCCCATGGACGACCCAGACAGACAGCTCCTGGGGCGGAAGCCGA AGGTTCCACAAGCCAGGCTCCTGGGAAGACCGAGGGGGCTCGAGCTAAAGCAGCTCAGCCTGGGGCCCTC TGTGACGTCTCTGAGGAGCTGAGCCGGCAGTTGGAAGACATCCTGAGTACATACTGTGTGGACAACAATC AGGGAGGCCCGGCTGAGGAGGGAGCACAGGGTGAGCCCACTGAGCCGGAAGACACGGAGAAGTCCCGAAC CTATGCAGCCAGGAATGGGGAGCCTGAACCAGGCATTCCAGTCGTCAACGGCGAGAAGGAGACCTCTAAG GGAGAGCCTGGAACAGAGGAGATCCGAGCGAGTGATGAAGTTGGAGACCGAGACCATCGGAGGCCACAGG AGAAGAAGAAAGCCAAGGGTCTAGGGAAGGAGATCACTCTGCTGATGCAGACACTGAACACGCTGAGTAC CCCAGAGGAGAAGCTGGCTGCACTGTGCAAGAAGTATGCTGAGCTGCTGGAAGAGCATCGGAACTCGCAG AAGCAGATGAAGCTCCTGCAGAAGAAGCAGAGCCAGCTCGTGCAGGAGAAGGACCATCTGCGAGGGGAAC ACAGCAAGGCTGTCCTGGCCCGAAGCAAGCTTGAGAGTCTGTGCCGGGAGCTGCAACGGCACAACCGGTC CCTGAAGGAAGAAGGCGTGCAGCGAGCCCGTGAGGAGGAGGAGAAGCGCAAAGAAGTGACTTCACACTTC CAGGTGACACTGAATGACATTCAGCTGCAGATGGAACAGCATAACGAGCGAAACTCCAAGCTGCGCCAGG AGAATATGGAGCTAGCCGAGAGGCTCAAGAAGTTGATCGAGCAATACGAGCTTCGTGAGGAGCATATCGA CAAAGTCTTCAAACATAAGGACCTGCAGCAGCAGCTAGTGGACGCCAAGCTCCAGCAGGCCCAGGAGATG CTGAAGGAGGCAGAGGAGCGGCACCAGCGAGAGAAGGAGTTTGTGAGGCTCAGGCCCCAGGGCTGTGGTG GGGCTGGAAGGAAGTGGGCTGGGTTCTGGCTTAGTTCAATCTATTTCTTATGGATGGGAGAGATTTTGCC TGCCCAATCCAGTAATTGCCTGTCCAGACAGCAGTCTGAGAGCAGGTAGCCTCAGTGGGTCCAGTGCTTG TGGCTAAAGAAGGTCAGACATACCCTCAGGGGCTTCTGACAGGTTCTGGGGTCCTGTCTTGGAAATAGCT CCTGAAGGAAGCGGTGGAGTCCCAGAGGATGTGCGAGCTGATGAAGCAGCAGGAGACCCACCTAAAGCAG CAGCTCGCCCTGTACACGGAGAAGTTTGAGGAGTTCCAGAACACACTTTCCAAAAGCAGTGAAGTGTTCA CCACGTTCAAACAGGAGATGGAAAAGATGACAAAGAAGATCAAGAAGCTGGAGAAAGAAACCACCATGTA TCGATCCCGGTGGGAAAGCAGCAACAAGGCTCTGCTGGAGATGGCTGAAGAGAAAACCGTCCGGGACAAA GAGCTGGAGGGCCTGCAGGTGAAAATCCAGCGGCTGGAGAAGCTGTGCCGAGCACTGCAGACCGAGCGCA ATGACCTCAACAAGAGGGTACAGGACCTGACTGCAGGGGGCATCACTGACATTGGCTCTGAGCGGAGGCC AGAGGCCACCACTGCCTCCAAGGAACAAGGGGTTGAAAGTCCTGGGGCTCAACCAGCCAGCTCTCCAAGG GCCACAGACGCTCCTTGCTGCTCGGGAGCCCCGAGCACAGGAACAGCAGGCCAGACAGGGCCTGGAGAGC CCACCCCTGCCACTGCCTAGAGATCACGGTGCTTGGGCATGCTGGGACAGGAGCAGCAGCCCAGTCAGGC CTCGTCCATGCAAGGCTTCCACACGGAGCAGCCCAGGGCTGAGGCCGTCGGACACTTGGCAATTGTGAAT TTTGTGGGTTAGTCTTACATGGATGGGCAGGCGTGCAGACCCTCATGCGGTTCTATAGTCAACACCTGTA GGTGCACTGTGGGCTTTCACCTCGGACAGTGTGCAGATGAAGTTGGAGACTCTGAAAACGGAAGAGTCAT AGAAGATGTCATCTGAAGCTGCCGTCACAGTAAGCTGGCAGGTCAGATGACTCCAATATTTTCCTACCCA GCTCTAAGGCTCAGACCCCTCTTGGCCTTTTCAGAGCTCATGACAAGTGAAAGCACCCAGGCCTGGACTC CTCCTTTTTGTGAGCAGAACTTGGGCGATTTGGGCTCTCGTCCCTCCCTCGCTGCCCTGGAGGTTCCATT GCTTCTCTTAACCTGGGAATGGTGTCCCTGGCAGAGTCTTTGTGGGGCAGAAGTGGAGGTGTGCCTGTGT GGGAGGGAATCCCTCAGGCCCACTTCTCCTCCGATAGTGCCAGGTCCAGGCCAGTGTCGCTTCTCAGTTC TCAGTAGCCTTATCATTCACAGGTGCCTCTAGCCTGCACAAATAATTGACAAATGTCACCCAAAGGATTC TTTTGGGAGGGTTTTTGTTTGCTTGTTTTGCATAAGAGTTTGTATTAAAGAACTTCAAAGGAAGGAACAG GGATACTCTAGCAGTGGTCCTCAGGTGCCTGGCCTCCAGTACCCCACTTGGAACCACCCTGTCAGGGTCC TTTGCCATGTGGGTGCCAAGGTATCCTGCTTGGGAAGATGAGATATTTCAGAGAAGGGAAGAGGCTTCTA ATGGCTTTGCCACAAGCTTGCCTATGGGCTTCAGCCTAGGAGGCAACCACTGGTTCCCATCACTTCTCCA TGCAGCCTTTGCTGGACCGCAGGCCCACGTGCCCCTTGGCGCATGGTCGTTTCTTGGCTCCTGCCCCTCA CCTCCATCTCAGAGGTGTGGTTTTTGAGGACTGCTCTTGTGCCATTTCCTTCGAACCCTCTTGGCCAAAA AGTGAGTCCTTGGGATTTCACTTCTTCCTGCCTAAGCTGGCTGGTAGGTCAAGAACAGACATCCCAGGAA CCAAAATAGCTGTGAGGAGTTGTCTTCACCGTCCCTCCCCACCCTCCTCAGTGTTACTGTGGTCTCGGGG CTCTGCTGAAGCTCTCGTGACTGCACACCTGCCAAGGTGTTGAGTCAGTTTCCACAACAGCTTTTCTGGA GTGACCGTCTGGGAAGCTGAGGCTTCTCTTCCATACACTGAGACTGGATGGAATTTTGCTTCTTGTATTT CAACTATTGCAAGTTTATCTTTCATAACTAGCCTCTAAGCCCCCACACACTCAAATTAAACATTGAGCTG GGTGTGTGATATATTCCTGTAATCCCAGAGCTCAGCAGAGCTAGGAAGCAGGACCCCTTGTCAGGAAACC AAAAAGTAAACAGCTGGAAGAAAACATCTCGTGCTGATGATCATGTGTTTAAATCCAGAAATTACAAATT AATGACCCCTTTCCCATGTCACAGGCTCTACCATTTCAAATACTTGCTACCCTGGTATATTTATTCACTC AGGGTGCCCAGCAGCTGTGTGTTGAGGCTTTGCCATCTCCAGCTGGAATCTGTTGTCCTGTGGAATTTCT CCCAAGGTCTTATATCTTGGAAATCATAGTATTCTTCCGGTTCCAGTGAGGCCTCAGCCCACACTCCAGG CTGAGATCTGACCTGTTAACCCATGGGGCTCCTTAGGCCACAGAGATGTAAGGGTGAGGCATCTTCCTGC CTCCTTGAAGACAGAAGGACCTTGTGTGGTCCACTACATTGGCTTGCCTCACTTCAGCTACCTCTTAAAG CTTGTGCAGGGTGACAGCTGCTGGGTCTCAGTGTGGCAGGCCAGAGAACCTTGGCTTTCCCTCCATCCAC TTGTAGGCACCCAGGGCAATGCAGATAGTAATCTCTCCCTTCTACCTTCTCCCCTCTGACCATATCTACA GTCACTACAGCTGCTCTGCTTTCCAAAGTCAGCCCAGGAGACTGGGCCAGCTTCAGGGAGGCTGCCTGTC TGTGAGAGGGCCAGCGCCTTCCTCACTTGGGCAAGTCCCCTGCACATGACCTCATTTTAGGACCAAGAGC TATGTTGGTTTCTTAGATTGTTAGCTTTTTCTCTAGAGGACCACAGTGGGTATGGCTTGGAGTCCAGGGC CCTTGGCTATACAAACAATATTTAGGTCCTTGTCCAGGGGAGAACTTCGTGTATGCCATGTCAGCCCCAC TTTTTGTCGTTGTTTTCCATGAGGCTTTTTTGGACCATGGTCGGAGCTTAGGCACTTTCTGTAAGAATGT TTCTGTAAAGATGGTTATTTAACGCTTCCTAGTCCCCATCATGTTAGTCCTCCAGAGCGCTAACCCAGAG GCCAGTGGAACTGCCCAGGTGTCCACAGAGGGGCTGCAGCCTGCAGAGAACTGCTCCAGCCCCCCTCCAC CTTAGTAGCATGTGTGGACCACCAGGCATCTGACTGCCCTTGACCAGCCTCGGGTAGGAGGGCTGCCTCT GTCCCCATGACTGCTTTCCTTTGCCACCCATACTTGTTTGAAGTTGTGCTGACAGCTTTTTTTTTTGTAC CCTTTCCCGTTCCCAGTTTGCGTTGGAATTGGCAGCAGCCAGGGACTTGCTATTGATGAATTTTACATTA AATAGTCCTGTTGCCTTAAAAAAAAAAAAAAAAAAAAAAA
Notes:	The probe template was PCR amplified from IMAGE:30362350 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30362350 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17609 same embryo
	EMAGE:17607 same embryo
	EMAGE:17608 same embryo
	EurExpress:euxassay_005956 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source