EMAGE mouse gene expression spatial database

Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:17631

Map2k6 mitogen-activated protein kinase kinase 6 ( MGI:1346870)
TS23 (14.5 dpc)
in situ hybridisation

Data Images


"Pseudo-wholemount" of euxassay_005961. This image has been made by aligning and collapsing the constitutent sections. Information about the method.	euxassay_005961_01	euxassay_005961_02	euxassay_005961_03	euxassay_005961_04

euxassay_005961_05	euxassay_005961_06	euxassay_005961_07	euxassay_005961_08	euxassay_005961_09

euxassay_005961_10	euxassay_005961_11	euxassay_005961_12	euxassay_005961_13	euxassay_005961_14

euxassay_005961_15	euxassay_005961_16	euxassay_005961_17	euxassay_005961_18	euxassay_005961_19

euxassay_005961_20	euxassay_005961_21	euxassay_005961_22

View assay images:
Expression pattern clarity:
Find spatially similar wholemount expression patterns:

Expression Pattern Description

Spatial Annotation:

Annotation colour key:

	strong
	moderate
	weak
	possible
	not detected

wholemount mapping

Download individual expression domains:

17631_wholemount_strong.wlz

17631_wholemount_moderate.wlz

17631_wholemount_weak.wlz

17631_wholemount_possible.wlz

17631_wholemount_not_detected.wlz

(what is wlz format?)

Download all expression domains:

EMAGE:17631_all_domains.zip

Find spatially similar wholemount expression patterns:

EMAGE spatially similar wholemount patterns

Morphological match to the template:

Text Annotation:

Structure

Level

Pattern

Notes

embryo

strong

ubiquitous

strong expression: see section 01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 17 18 19 20 21 22

Annotation Validation:

spatial mapping by EMAGE editor, text annotation by author

Detection Reagent

Type:	in situ hybridisation probe
Identifier:	T9525
Entity Detected:	Map2k6, mitogen-activated protein kinase kinase 6 ( MGI:1346870)
Sequence:	sense strand is shown >T9525 TACCATTCTGATGTTGGAGCGGCCGCCTGCCCTGGCCCATCATGTAGCTGCAGCACAGCCTTCCCTAACG TTGCAACTGGGGGAAAAATCACTTTCTAGACTGTTTTGCAAGGTGTGCAATTCCACCTTGACTCCCTGAA AGTCCATCTGCTGCATCGGTCAAGAGAAACTCCACTTGCATGAAGATTGCACGCCTGCAGCTTGCATCTT TGTTGCAAAACTAGCTACAGAAGAGAAGCAAGGCAAAGTCTTTTGTGCTCCCCTCCCCCATCAAAGGAAA GGGGAAAATGTCTCAGTCGAAAGGCAAGAAGCGAAACCCGGGCCTTAAGATTCCAAAAGAAGCGTTTGAA CAGCCTCAGACCAGTTCCACGCCGCCTCGGGATTTAGACTCCAAGGCTTGCATATCTATTGGAAACCAGA ACTTTGAGGTGAAGGCAGATGACCTGGAGCCGATAGTGGAGCTGGGACGAGGTGCGTACGGGGTGGTGGA GAAGATGCGTCACGTGCCCAGCGGGCAGATCATGGCAGTGAAGCGGATACGGGCCACAGTTAATAGCCAG GAACAGAAACGGCTGCTGATGGATTTGGATGTCTCCATGAGGACGGTGGACTGTCCATTCACCGTGACCT TCTACGGTGCACTCTTCCGGGAGGGCGACGTGTGGATCTGCATGGAGCTCATGGATACGTCACTAGATAA ATTCTACAAACAAGTTATTGATAAAGGCCAAACAATTCCAGAGGATATCTTAGGAAAGATAGCAGTTTCT ATTGTAAAAGCGTTAGAACATTTACACAGTAAGCTGTCTGTTATCCATCGAGACGTCAAGCCTTCTAATG TGCTCATTAACACACTGGGCCAGGTGAAGATGTGTGACTTTGGAATCAGTGGCTACCTGGTCGACTCTGT TGCTAAAACGATCGATGCCGGTTGCAAACCATACATGGCTCCTGAACGAATAAATCCAGAGCTCAACCAG AAGGGGTACAGTGTGAAGTCTGACATTTGGAGCCTGGGCATCACCATGATCGAGCTGGCCATCCTTCGGT TTCCTTATGATTCTTGGGGAACGCCCTTCCAGCAGCTAAAGCAGGTGGTCGAAGAGCCCTCTCCTCAGCT CCCAGCAGACAAGTTCTCCGCGGACTTTGTTGACTTTACCTCACAGTGCTTGAAGAAAAATTCCAAAGAA CGGCCCACATATCCAGAGCTTATGCAACATCCATTTTTCACCGTACATGAATCCAAAGCAGCAGACGTGG CATCTTTTGTAAAACTGATACTTGGGGACTAAAAAGCCATGGACTTAACTGGTCGACCCTACTGTGGATT GGTGGGTTTACAGGGTGAAGAAAGTTCACTACAGAGCCAACAGAAAGTCATCTTGAGGTCATTGAACCCT GCCTTTCTGAGGGGTTTCCTCTCCCCGTTTTTCTTTTTCCTCTCCAAAGGGGGCCTTGGAATCTCTAGCG TAGGCTGAACTCTCTAGATGGATGAAATACAACAAAGGCTTAGGACTTGAAATGGTGATTAAATATTTAA TGGCAAGTCATACGGGTGGGTCCTCGAGCTTCTCAGATCTCTCGTGTTCTTTACGAAATGAATGCAATTG GCCCTGGTAACAAGGTGCTACAGTAGTGAAGAGATTGTGAAGTAGATTTGTAGCGTATCCCACTTATTAT TTTAATATTTATGTTTCAGTGCTTGGTTGGAAATATTCCATTTTATGCAAGAAGGGAGATACAGAGACAG GGCTGACTCGGCAGTATTTATAGGGCTTTTATTTTTTTTGAGTTCAATCATGTCTGTGGTCCAGAGGAAG TTATTTAATATGCATTTTTAAGGATATTATAAAAATCTCCAGCAAAGGGGCTCTTCCTGTACAGTGTGGC TTGCAGCTCTCATGGCTGCTGCTCCCGACTGTCAACTCAACCGTGGCTGATCATCGCATCGTTTGAATGA ACTGTCAAAGTTAATGTCCCCCCGCCTCCCTCCCCCAACTTTGGAAACCATGAAAGTCACTTGTATCACG GCTCAAAGAGTAAAAAAATACAATGGTTCTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA A
Notes:	The probe template was PCR amplified from IMAGE:30541969 using vector (pYX-Asc) specific primers. Forward Primer - name:RZPD T3, sequence:ATTAACCCTCACTAAAGGGA; Reverse Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG. Anti-sense probe was then transcribed from the PCR amplified template using T7 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:30541969 which was retrieved directly from NCBI.
Chemistry:	RNA
Strand:	antisense
Label:	digoxigenin

Specimen

Organism:	mouse
Strain:	C57BL/6
Age:	14.5 dpc
Theiler Stage:	TS23
Mutations:	none (wild-type)
Preparation:	section

Procedures

Fixation:	none
Embedding:	cryosection (OCT)
Staining procedure:	alkaline phosphatase + NBT/BCIP

General Information

Authors:	Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:	Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:	EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:	screen
References:	[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:	EMAGE:17632 same embryo
	EMAGE:17627 same embryo
	EMAGE:17629 same embryo
	EMAGE:17630 same embryo
	EMAGE:17628 same embryo
	EurExpress:euxassay_005961 same experiment
	Ensembl same gene
	Allen Brain Atlas same gene
	BioGPS same gene
	International Mouse Knockout Project Status same gene
	GEISHA Chicken ISH Database same gene
	EMBL-EBI Gene Expression Atlas same gene
	BrainStars same gene
	ViBrism same gene
Data Source