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EMAGE:18190

C530025M09Rik RIKEN cDNA C530025M09 gene ( MGI:2442090)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:18190 EMAGE:18190 EMAGE:18190 EMAGE:18190 EMAGE:18190
"Pseudo-wholemount" of euxassay_011968. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_011968_01 euxassay_011968_02 euxassay_011968_03 euxassay_011968_04
EMAGE:18190 EMAGE:18190 EMAGE:18190 EMAGE:18190 EMAGE:18190
euxassay_011968_05 euxassay_011968_06 euxassay_011968_07 euxassay_011968_08 euxassay_011968_09
EMAGE:18190 EMAGE:18190 EMAGE:18190 EMAGE:18190 EMAGE:18190
euxassay_011968_10 euxassay_011968_11 euxassay_011968_12 euxassay_011968_13 euxassay_011968_14
EMAGE:18190 EMAGE:18190 EMAGE:18190 EMAGE:18190 EMAGE:18190
euxassay_011968_15 euxassay_011968_16 euxassay_011968_17 euxassay_011968_18 euxassay_011968_19

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:18190Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
18190_wholemount_strong.wlz
18190_wholemount_moderate.wlz
18190_wholemount_weak.wlz
18190_wholemount_possible.wlz
18190_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:18190_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T36092
Entity Detected:C530025M09Rik, RIKEN cDNA C530025M09 gene ( MGI:2442090)
Sequence:sense strand is shown

>T36092
GTTCCTGTCCTCTCTGCATCTTCCCCGTCAGGCGCCATCTCCCCTCTCTCGGGGCGACACTGTGTCTCCC
TAGTCCGGCCACTGCGACCCTTCAGGACTTACCGCGGCCGGCACACCATCACCGCCGCCTGGTCTGCGCG
CTGCGAGGCGGAGCAGGACACCCGCCTGCGCCAGGGCATCCTCTCGCGCCCGCCACACCCGCCCACTCCG
GTGGCCCGGGGTCCTCCCGCGCAGCTCTGGTGCTCGGGACTTACCTCCGGGACAAGGTGACCCGGCTGGT
GCGCCCAGGCGGCCGCCCGCGCGTCTCGAGAGCCGGGAAGCGTGAGGGGCGCGGGGCGGTGCGGAGCCCG
CCTCTGCTTCTGGGCTCGTGGCTCTCCGCCTCTGCCCTCCCCTGCGCGCAGCTTCCCCCGCCGCTCCCCT
CCTTGGATCACTGCCAGCGCCCTGGGCTGCCCCGAGCACACAGTTCCCGAGAGCCGAACACAGGGCTGCG
GCGCCACCCTTCCAGAACCCGGTCCTCTTGGCCCCTAGGAGCACAAAGGGCGCGGGCTGAACTAGGGGTG
ACCCGGGATGTGCCGTTCCACTCTTTGGTCTCGCGGAGCCTGGCGACTTGTGTGCAAGAGTATGCGGCCG
CGGTCCCCGGGAGAAGGTGGCCGTGAGGAAGAGGAGGGGGAGAGAGAGCGGCAGCACACGAAGGTGGCCA
CTAACTTTGCTCCAGGCTAGCTGTGCCCTCGCCAGTGATAGCGGCTGGCGGGTGGCCGGGGGCTAGTGTC
TGGAAACGTTGGGGCGACTGAGATGGGGGAAGGGGGACTGCCACTGGGAACTAGGAGGACAAGAATTAGC
CGCCGACTGTGGAAACGGTGGCTTCCCTTGGTCCTAAAAGACCTCCCAGGCTCCAGGTCGACTTGAGGTT
CAGAAGGTTTCTCTGGACACTGTAGGTTCAGAGAAAGACCCACGTCCTGACC
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 79803. Forward Primer - name:079803_F_cDNA_C530025M09Rik, sequence:GTTCCTGTCCTCTCTGCATCTT; Reverse Primer - name:079803_N_SP6_cDNA_C530025M09Rik, sequence:GGTCAGGACGTGGGTCTTTCT. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:18188 same embryo
 EMAGE:18189 same embryo
 EMAGE:18187 same embryo
 EMAGE:18186 same embryo
 EurExpress:euxassay_011968 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS