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EMAGE:19391

BC002118 (BC002118)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19391
euxassay_006267_01

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19391Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19391_wholemount_moderate.wlz
19391_wholemount_weak.wlz
19391_wholemount_possible.wlz
19391_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19391_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6069
Entity Detected:BC002118, (BC002118)
Sequence:sense strand is shown

>T6069
TAAATTTCTTAGTTGAAACCAAAATATAAGATGGCAGCAGTGACAACACAGGCTTCGATTGCCGGATTCC
GGCCATGCGCATCAAAATCGAGGTTCTTGACGGGTGCTCCAGGAAAACTAAACAAGGAATGTGGTGTTAG
ATTGCCCTCAACTTCATCAACTAATTCTTTGAAGGTTGAAGCTAAGAAGGGAGAGTGGTTGCCTGGTTTG
GCTTCCCCTGCCTATCTTAATGGGAGTCTTCCAGGAGACAACGGATTTGATCCCTTGGCATTAGCTGAGG
ACCCAGAGAACTTGAAGTGGTTTGTGCAAGCCGAGCTGGTGAACGGCCGATGGGCAATGCTAGGGGTGGC
TGGAATGTTGCTTCCAGAGGTGTTCACACAGATCGGAATCATCAACGTTCCGAAATGGTATGATGCAGGG
AAACAGGAGTACTTTGCCTCATCATCGACCTTGTTTGTGATTGAGTTCATCTTATTCCACTATGTGGAGA
TAAGGAGATGGCAGGACATCAAGAACCCAGGAAGTGTTAACCAAGACCCTATCTTCAAGCAATATAGCTT
GCCTCCTAATGAAGTTGGTTACCCTGGTGGCATTTTTAACCCTCTCAACTTTGCACCTACTGCTGAGGCC
AAGGAGAAGGAGCTTGCTAATGGGAGATTGGCAATGTTGGCATTCTTAGGATTCATTGTGCAACACAATG
TGACTGGAAAGGGGCCTTTTGATAACCTTCTGCAGCATCTATCAGACCCATGGCACAACACCATTATTCA
GACATTCGGTGGTAACTAAGATCCATCTCAAAAACTAGAAGGAAACACTGCGTTATAGTTCTTTTGTAAC
AATCATATCTTTTGTGGACTATGTGATATTGAGCTTCTGGTAATTATTAAAGGGTTTCCAATGTACAGAG
CAACTGAAGTTGGCACTACTATTTTTTCCAATCTTTAGCTTTCATGTTATCATATTTTTACTGCTTAATT
ACTTGCTTAGCAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3491066 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3491066 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19392 same embryo
 EMAGE:19394 same embryo
 EMAGE:19393 same embryo
 EMAGE:19390 same embryo
 EMAGE:19389 same embryo
 EurExpress:euxassay_006267 same experiment
  Allen Brain Atlas same gene
  BioGPS same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS