Quicksearch Help

(Click the icon to keep this page displayed.)

EMAGE:19491

3230401D17Rik RIKEN cDNA 3230401D17 gene ( MGI:1913930)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491
"Pseudo-wholemount" of euxassay_004912. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_004912_01 euxassay_004912_02 euxassay_004912_03 euxassay_004912_04
EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491
euxassay_004912_05 euxassay_004912_06 euxassay_004912_07 euxassay_004912_08 euxassay_004912_09
EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491
euxassay_004912_10 euxassay_004912_11 euxassay_004912_12 euxassay_004912_13 euxassay_004912_14
EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491
euxassay_004912_15 euxassay_004912_16 euxassay_004912_17 euxassay_004912_18 euxassay_004912_19
EMAGE:19491 EMAGE:19491 EMAGE:19491 EMAGE:19491
euxassay_004912_20 euxassay_004912_21 euxassay_004912_22 euxassay_004912_23

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:19491Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
19491_wholemount_strong.wlz
19491_wholemount_moderate.wlz
19491_wholemount_weak.wlz
19491_wholemount_possible.wlz
19491_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:19491_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: one star
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T6901
Entity Detected:3230401D17Rik, RIKEN cDNA 3230401D17 gene ( MGI:1913930)
Sequence:sense strand is shown

>T6901
CGGAGAGACGCTCGGAGCCGACGGGGCCGGATTCCCGGGAGCGCCCCAGCTGCGAGGAGTATTAACGGGA
GGGAACATCAATAGGCGTACAGAAACCTTCACAATGAAATCCGAAGCCAAGGATGGAGAGGAGGAAAGTC
TGCAAACTGCCTTCAAGAAATTAAGAGTGGACGCATCAGGGTCCATCATATCTCTGTCTGTTGGAGAAGG
CCCAAGTGTCAGAGCATCAGCCAGAACAGCAGCCGATGATACCAAACCGAAAACCATGTGTGCATCTAAA
GACAGTTGGCATGGGTCTACAAGGAAGTCTTCACGAGGAGCAGTGAGAACCCAGCGTCGTAGACGGTCTA
AGTCTCCTGTTCTTCATCCTCCCAAATTCATACATTGCAGTACAACAGCACCTCCTTCCAGCAGCCAGCT
TAAGCACAGAAGCCAGACTGAGCCACCCGATGGCATCAGTGGACGGGGAATTTCAACACCCAAAGAGTTC
AACGCAGGAGAAAACTCTACTTCTCTTGATGTTAATCACACAGGAGCAGCCATCGAGCCTCTGAGAAGCT
CGGTTCTGAGGCTCCCATCAGAGAGTAAAACAGAAGAGCTCTCTGATGCTACCCAAGTCTCCCAAGAAAG
TCTTACGGCTAACGATCTCTCTGACTTTCAATCTGTTTCCAAGCTAAGTCAGGGCAAGCCATGTGTGTGT
GTAGGCAAGGAGTGCCAGTGTAAGAGGTGGCATGACATGGAAGTGTATTCCTTTTCAGGTCTGCAGAATG
TCCCTCCTCTGGCCCCAGAACGAAGATCACTTGAGGACTACTCTCAGTCACTGCACACCAGAACTCTGTC
TGGCTCGCCTCGATCCTGTTCCGAGCAAGCTCGTGTCTATGTGGATGATGTGACCATTGAGGACCTAGCA
GGCTACATGGAGTATTACTTGTATATCCCTAAGAAAATGTCCCACATGGCAGAGATGATGTACACCTGAT
AACAAAAGGCTAGTTCATGTGCTTTAAACCAATGAAAGGTTATCAGAGGTTTAGTTAACGGCAGACCCGG
TGGCCACTCTGTGAGAAGACATCTCTTTCTGCTCACTGCTTGCAATAAAAACTATTCTTGGCATCTCAGT
TAATCTTCATTCTGTCAGTTTACTGGGTTCTTATGTACCTGTCAAAGGCAAGCAGGTCAAAGAAAATCTC
CTAAAAATGTTCTGAGGGCTGAAGAAACCATAATGACTTGGAGACTGGCGGCGGTGGGGACATGGAGACA
TCCTTATAAGACAGCATATTTCAGACCTGCTTACGATGTGGCAGCAAGAAACTCAAATGTGCATTTGTAA
CTGAATTGAACACTTGTCATGCTGTAGATGCCAGCCCATCAATAGTAGAGCTTATGAGACTCATTTAAAC
TGTCTTTGGTTTAACACGGGTTTGTGTCATTAAAGGTTTCTTACGTTACTGTTGAGTCAGATATCTAAGG
TTTAGATTCAGGTGGCCTGTCCTATTTTGTTTTGAGGGAGTCATTAACCTTACTGTCACTAAATAAACCC
CTGCTGGTGCTGTTTATCCAGAAAAAAAAAAAAAAAAAAAAAA
Notes:The probe template was PCR amplified from IMAGE:3968876 using vector (pCMV-SPORT6) specific primers. Forward Primer - name:RZPD T7, sequence:TAATACGACTCACTATAGGG; Reverse Primer - name:RZPD sp6, sequence:ATTTAGGTGACACTATAG. Anti-sense probe was then transcribed from the PCR amplified template using Sp6 polymerase. EMAGE Editor's Note: the probe sequence indicated here was given by the EURExpress Consortium and has been checked using a computational method whereby a BLAST comparison was made against the full insert sequence of IMAGE:3968876 which was retrieved directly from NCBI.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:19492 same embryo
 EMAGE:19489 same embryo
 EMAGE:19490 same embryo
 EMAGE:19488 same embryo
 EMAGE:19487 same embryo
 EurExpress:euxassay_004912 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS