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EMAGE:20764

1700042G07Rik RIKEN cDNA 1700042G07 gene ( MGI:1914573)
TS23 (14.5 dpc)
in situ hybridisation

Data Images
EMAGE:20764 EMAGE:20764 EMAGE:20764 EMAGE:20764 EMAGE:20764
"Pseudo-wholemount" of euxassay_014022. This image has been made by aligning and collapsing the constitutent sections. Information about the method. euxassay_014022_01 euxassay_014022_02 euxassay_014022_03 euxassay_014022_04
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euxassay_014022_05 euxassay_014022_06 euxassay_014022_07 euxassay_014022_08 euxassay_014022_09
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euxassay_014022_10 euxassay_014022_11 euxassay_014022_12 euxassay_014022_13 euxassay_014022_14
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euxassay_014022_15 euxassay_014022_16 euxassay_014022_17 euxassay_014022_18 euxassay_014022_19
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euxassay_014022_20 euxassay_014022_21 euxassay_014022_22 euxassay_014022_23 euxassay_014022_24

View assay images: EMAGE genex expression entry
Expression pattern clarity: no stars
Find spatially similar wholemount expression patterns: Find spatially similar wholemount patterns
Expression Pattern Description
Spatial Annotation:
EMAGE:20764Annotation colour key:  
strong strong      
gene expression moderate moderate    
gene expression weak weak        
gene expression possible possible    
gene expression not detected not detected
wholemount mapping

Download individual expression domains:
20764_wholemount_strong.wlz
20764_wholemount_moderate.wlz
20764_wholemount_weak.wlz
20764_wholemount_possible.wlz
20764_wholemount_not_detected.wlz
(what is wlz format?)
Download all expression domains: EMAGE:20764_all_domains.zip
Find spatially similar wholemount expression patterns:  EMAGE spatially similar wholemount patterns
Morphological match to the template: two stars
Annotation Validation: spatial mapping by EMAGE editor
Detection Reagent
Type:in situ hybridisation probe
Identifier:T40173
Entity Detected:1700042G07Rik, RIKEN cDNA 1700042G07 gene ( MGI:1914573)
Sequence:sense strand is shown

>T40173
CCTTAGGCAGGCTTCATATGTCATAGAGATTCAGTGCTTGGCCAGCAGAACCCCTCAGGAGCTCCCTGTA
GCCATGGGGCCTTCTCAGCTTGTTCGAGCCCCTCGGCCTCCGGGCTTGACTTCTCCCTACCGAAGGCCAG
GGATGGGTGGGCCCAGGCGCCGGTGTCCCAGTATGTTCAAGTGTAGCCGCAGGACATACCGGCAGAAACC
CCGAGGCCCAACTGCCACCAATCCTGCCTCTGAGGCCACAAACATCAGTGACACGGACACTACCACCAGT
GTATTGATTCTGTCACCTCGAGTTCTCAGATTTCTCTGTCAACCTGGGGGCTTTCTGGTCCTCTAGAAAT
GCCCAGAAGCTCGGCCTGCACTTGACCTGCTGCTCCAGAGGCTGTTGATGGTAGACAGCAA
Notes:The probe template was received by the EURExpress consortium as an aliquot of PCR product from the Allen Brain Atlas (originally amplified from wild type C57BL/6J mouse whole brain cDNA), and this was re-amplified using the gene-specific Allen Brain Atlas Primer Pair 78127. Forward Primer - name:078127_F_cDNA_1700042G07Rik, sequence:CCTTAGGCAGGCTTCATATGTC; Reverse Primer - name:078127_N_SP6_cDNA_1700042G07Rik, sequence:TTGCTGTCTACCATCAACAGCC. The reverse primer contains a 5' extension containing an Sp6 RNA polymerase binding site (this extension is not shown in the primer sequence listed here). Anti-sense probe was transcribed from the PCR amplified template using Sp6 polymerase.
Chemistry:RNA
Strand:antisense
Label:digoxigenin
Specimen
Organism:mouse
Strain:C57BL/6
Age:14.5 dpc
Theiler Stage:TS23
Mutations:none (wild-type)
Preparation:section
Procedures
Fixation:none
Embedding:cryosection (OCT)
Staining procedure:alkaline phosphatase + NBT/BCIP
General Information
Authors:Dr. Graciana Diez-Roux, Prof. Gregor Eichele, Prof. Richard Baldock, Dr. Duncan Davidson, Prof. Stylianos Antonarakis, Dr. Marie Laure Yaspo, Prof. Salvador Martinez Perez, Dr. Pascal Dolle, Dr. David Tannahill, Prof. Pier Paolo Di Fiore, Mr. Stefan Kruse, Mr. Paolo Sarmientos, Dr. Uwe Radelof, Prof. Andrea Ballabio.
Principal investigator:Professor Andrea Ballabio, Fondazione Telethon, TIGEM Instituto di Genetica e Medicina, Via Pietro Castellino 111 80131, Napoli, Italy 80131
Submitted by:EMAGE EDITOR, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK EH4 2XU
Experiment type:screen
References:[ doi:10.1371/journal.pbio.1000582] [ PMID:21267068] Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, et al 2011 A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo PLoS Biol (9)
Links:EMAGE:20766 same embryo
 EMAGE:20765 same embryo
 EMAGE:20763 same embryo
 EMAGE:20767 same embryo
 EMAGE:20762 same embryo
 EurExpress:euxassay_014022 same experiment
  Ensembl same gene
  Allen Brain Atlas same gene
  BioGPS same gene
  International Mouse Knockout Project Status same gene
  GEISHA Chicken ISH Database same gene
  EMBL-EBI Gene Expression Atlas same gene
  BrainStars same gene
  ViBrism same gene
Data SourceEUREXPRESS